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Ampvis subset allow file input for taxa selection #6463

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paulzierep
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FOR CONTRIBUTOR:

  • I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • License permits unrestricted use (educational + commercial)
  • This PR adds a new tool or tool collection
  • This PR updates an existing tool or tool collection
  • This PR does something else (explain below)

We want to use ampvis2 subset in a workflow. The use case is, that we run differential abundance tools to select the taxa / OTU we are interested in and then plot them with ampvis2. Therefore, I modified the wrapper to allow the input of a file that contains the differential abundant taxa.

@bernt-matthias what you think about it ?

@bgruening
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version bump is needed ...

@paulzierep
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I don't think the tool error is related to this PR, can we rerun the CI ?

@paulzierep
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can we merge it, would need it for a project

@bernt-matthias bernt-matthias merged commit d929359 into galaxyproject:main Oct 25, 2024
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3 participants