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Limit maaslin2 1.16.0 to 1 core #65

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merged 2 commits into from
Jun 29, 2024
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Since this version of maaslin2 cannot handle more than 1 core, limit it. See galaxyproject/tools-iuc#5999

Since this version of maaslin2 cannot handle more than 1 core, limit it.
tools.yml Outdated
@@ -1364,6 +1364,8 @@ tools:
mem: 8
toolshed.g2.bx.psu.edu/repos/iuc/lumpy_sv/lumpy_sv/.*:
mem: 8
toolshed.g2.bx.psu.edu/repos/iuc/maaslin2/maaslin2/1.16.0+galaxy0:
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Is it only for a specific version or all versions of Maaslin2? You could modify that to a regex like the other tool IDs in this shared DB.

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no, that is by purpose, only this version cannot handle multiple cores

@paulzierep paulzierep changed the title Update tools.yml Limit maaslin2 1.16.0 to 1 core Jun 26, 2024
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Co-authored-by: Sanjay Kumar Srikakulam <sanjaysrikakulam@gmail.com>
@cat-bro cat-bro merged commit bbadae5 into galaxyproject:main Jun 29, 2024
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3 participants