Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Updated recetox tools which require docker containers #67

Merged
merged 2 commits into from
Sep 2, 2024
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
24 changes: 24 additions & 0 deletions tools.yml
Original file line number Diff line number Diff line change
Expand Up @@ -2416,8 +2416,32 @@ tools:
mem: 12
env:
_JAVA_OPTIONS: -Xmx{int(mem)}G -Xms1G
toolshed.g2.bx.psu.edu/repos/recetox/matchms_formatter/matchms_formatter/.*:
mem: 32
toolshed.g2.bx.psu.edu/repos/recetox/qcxms_neutral_run/qcxms_neutral_run/.*:
mem: 32
scheduling:
require:
- docker
toolshed.g2.bx.psu.edu/repos/recetox/qcxms_production_run/qcxms_production_run/.*:
mem: 8
scheduling:
require:
- docker
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/.*:
cores: 4
mem: 32
toolshed.g2.bx.psu.edu/repos/recetox/recetox_aplcms_align_features/recetox_aplcms_align_features/.*:
cores: 4
toolshed.g2.bx.psu.edu/repos/recetox/recetox_aplcms_generate_feature_table/recetox_aplcms_generate_feature_table/.*:
mem: 16
toolshed.g2.bx.psu.edu/repos/recetox/recetox_aplcms_recover_weaker_signals/recetox_aplcms_recover_weaker_signals/.*:
mem: 16
toolshed.g2.bx.psu.edu/repos/recetox/recetox_msfinder/recetox_msfinder/.*:
mem: 16
scheduling:
require:
- docker
toolshed.g2.bx.psu.edu/repos/rnateam/blockbuster/blockbuster/.*:
mem: 64
toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/.*:
Expand Down
Loading