Add thermo.raw as accepted datatype for scan file.

tools/fragpipe/macros.xml

@@ -20,11 +20,11 @@
       name, experiment, bioreplicate, data type
     -->
     <xml name="samples">
-        <param name="inputs" type="data" format="mzml,mzxml" multiple="true" label="Proteomics Spectrum files"  help="All input scan files must of a matching format: mzML, mzXML"/>
+        <param name="inputs" type="data" format="mzml,mzxml,thermo.raw" multiple="true" label="Proteomics Spectrum files"  help="All input scan files must be named with one of the following extensions: .mzML, .mzXML, or .raw"/>
         <param name="input_prefix" type="text" value="" optional="true" label="File name prefix" help="Names inputs: prefix_rep#.mzXML Leave blank to use History names of inputs">
               <validator type="regex" message="">[a-zA-Z][a-zA-Z0-9_-]*</validator>
         </param>
-        <param name="manifest" type="data" format="tabular" label="Manifest file" help="TSV file with entries for each input scan file: Name (Name of input Galaxy history item. Extension in the name must be mzML or mzXML.), Experiment (empty, alphanumeric, or _), Bioreplicate (empty or integer), Data type (DDA, DIA, GPF-DIA, DIA-Quant, or DIA-lib)"/>
+        <param name="manifest" type="data" format="tabular" label="Manifest file" help="TSV file with entries for each input scan file: Name (Name of input Galaxy history item. Extension in the name must be .mzML, .mzXML, or .raw.), Experiment (empty, alphanumeric, or _), Bioreplicate (empty or integer), Data type (DDA, DIA, GPF-DIA, DIA-Quant, or DIA-lib)"/>
     </xml>
 
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