add biotools id to eggnog mapper and metaGeneAnnotator (#733)

Co-authored-by: Mike Thang <m.thang@mthang-sandpit.qfab.org>
galaxyproteomics · Nov 1, 2023 · bf9898a · bf9898a
1 parent fb66172
commit bf9898a
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Showing 5 changed files with 13 additions and 0 deletions.
diff --git a/tools/eggnog_mapper/eggnog_macros.xml b/tools/eggnog_mapper/eggnog_macros.xml
@@ -23,6 +23,11 @@
             <requirement type="package" version="@TOOL_VERSION@">eggnog-mapper</requirement>
         </requirements>
     </xml>
+    <xml name="biotools">
+        <xrefs>
+            <xref type="bio.tools">eggnog-mapper-v2</xref>
+        </xrefs>
+    </xml>
     <xml name="version_command">
         <version_command>emapper.py --version</version_command>
     </xml>

diff --git a/tools/eggnog_mapper/eggnog_mapper/eggnog_mapper.xml b/tools/eggnog_mapper/eggnog_mapper/eggnog_mapper.xml
@@ -4,6 +4,7 @@
         <import>eggnog_macros.xml</import>
     </macros>
     <expand macro="requirements"/>
+    <expand macro="biotools"/>
     <expand macro="version_command"/>
     <command detect_errors="aggressive"><![CDATA[
         @MERGE_ANNOTATIONS@

diff --git a/tools/eggnog_mapper/eggnog_mapper/eggnog_mapper_annotate.xml b/tools/eggnog_mapper/eggnog_mapper/eggnog_mapper_annotate.xml
@@ -4,6 +4,7 @@
         <import>eggnog_macros.xml</import>
     </macros>
     <expand macro="requirements"/>
+    <expand macro="biotools"/>
     <expand macro="version_command"/>
     <command detect_errors="aggressive"><![CDATA[
         @MERGE_ANNOTATIONS@

diff --git a/tools/eggnog_mapper/eggnog_mapper/eggnog_mapper_search.xml b/tools/eggnog_mapper/eggnog_mapper/eggnog_mapper_search.xml
@@ -4,6 +4,7 @@
         <import>eggnog_macros.xml</import>
     </macros>
     <expand macro="requirements"/>
+    <expand macro="biotools"/>
     <expand macro="version_command"/>
     <command detect_errors="aggressive"><![CDATA[
         emapper.py

diff --git a/tools/metagene_annotator/metagene_annotator.xml b/tools/metagene_annotator/metagene_annotator.xml
@@ -4,6 +4,11 @@
         <requirement type="package">metagene_annotator</requirement>
         <requirement type="package">python</requirement>
     </requirements>
+    <xml name="biotools">
+        <xrefs>
+            <xref type="bio.tools">etageneannotator</xref>
+        </xrefs>
+    </xml>
     <command detect_errors="exit_code"><![CDATA[
         #set $output_list = str($output_formats).split(',')
         touch mga_output