Update qupath_roi_splitter.xml

galaxyproteomics · Apr 11, 2024 · d1d9509 · d1d9509
1 parent ef82401
commit d1d9509
Showing 1 changed file with 5 additions and 4 deletions.
diff --git a/tools/qupath_roi_splitter/qupath_roi_splitter.xml b/tools/qupath_roi_splitter/qupath_roi_splitter.xml
@@ -13,11 +13,12 @@
      <command detect_errors="exit_code"><![CDATA[
         #for $input in $input_collection
             python3 '$__tool_directory__/qupath_roi_splitter.py'
-                    --qupath_roi '$input'
-                    $optional.fill
-                    $optional.all
+                --qupath_roi '$input'
+                $optional.fill
+                $optional.all
+             &&
         #end for
-        && mkdir out
+        mkdir out
         && mv *.txt out/
     ]]></command>
     <inputs>