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genomic-medicine-sweden · Oct 10, 2024 · 420b8b3 · 420b8b3
1 parent 1de53e5
commit 420b8b3
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Showing 2 changed files with 6 additions and 2 deletions.
diff --git a/modules/local/drop_config_runAE.nf b/modules/local/drop_config_runAE.nf
@@ -83,7 +83,9 @@ process DROP_CONFIG_RUN_AE {
     touch OUTRIDER_results_all.Rds
     touch gene_name_mapping_.tsv
     mkdir output
-    mkdir exported_counts
+    if [[ !skip_export_counts_drop ]]; then
+        mkdir exported_counts
+    fi
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":

diff --git a/modules/local/drop_config_runAS.nf b/modules/local/drop_config_runAS.nf
@@ -80,7 +80,9 @@ process DROP_CONFIG_RUN_AS {
     touch FRASER_results_fraser--.tsv
     touch gene_name_mapping_.tsv
     mkdir output
-    mkdir exported_counts
+    if [[ !skip_export_counts_drop ]]; then
+        mkdir exported_counts
+    fi
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":