modified CHANGELOG

genomic-medicine-sweden · Oct 29, 2024 · 6452dd8 · 6452dd8
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commit 6452dd8
Showing 1 changed file with 6 additions and 4 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -36,22 +36,24 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Updated modules using drop drop_config_runAE, drop_config_runAS, drop_sample_annot, and drop_filter_results [#147](https://github.com/genomic-medicine-sweden/tomte/pull/147)
 - Updated nf-core/tools template to v3.0.2 [#167](https://github.com/genomic-medicine-sweden/tomte/pull/167)
 - Updated multiqc version to 1.25.1 [#167](https://github.com/genomic-medicine-sweden/tomte/pull/167)
-- Updated modules [#177](https://github.com/genomic-medicine-sweden/tomte/pull/177)
+- Updated modules bcftools/annotate, bcftools/merge, bcftools/mpileup, bcftools/norm, bcftools/stats, bcftools/view, cat/fastq, ensemblvep/filtervep, ensemblvep/vep, fastp, gatk4/asereadcounter, gatk4/bedtointervallist, gatk4/createsequencedictionary, gatk4/haplotypecaller, gatk4/splitncigarreads, gatk4/variantfiltration, gawk, gffcompare, gunzip, picard/collectinsertsizemetrics, picard/collectrnaseqmetrics, salmon/index, salmon/quant, samtools/faidx, samtools/index, samtools/view, star/align, star/genomegenerate, stringtie/stringtie, tabix/bgziptabix, tabix/tabix, ucsc/wigtobigwig, untar [#177](https://github.com/genomic-medicine-sweden/tomte/pull/177)
 
 | Tool                           | Old version | New version |
 | ------------------------------ | ----------- | ----------- |
-| ensemblvep/filtervep           | 110         | 112         |
-| ensemblvep/vep                 | 110         | 112         |
+| ensemblvep/filtervep           | 110         | 113         |
+| ensemblvep/vep                 | 110         | 113         |
 | DROP                           | 1.3.3       | 1.4.0       |
 | multiqc                        | 1.21        | 1.25.1      |
-| ensemblvep/filtervep           | 112         | 113         |
+| cat/fastq                      | 8.30        | 9.5         |
 | ensemblvep/vep                 | 112         | 113         |
 | picard/collectinsertsizemtrics | 3.2.0       | 3.3.0       |
 | salmon/index                   | 1.10.1      | 1.10.3      |
 | salmon/quant                   | 1.10.1      | 1.10.3      |
 | samtools/faidx                 | 1.20        | 1.21        |
 | samtools/index                 | 1.20        | 1.21        |
 | samtools/view                  | 1.20        | 1.21        |
+| star/align                     | 2.7.10a     | 2.7.11b     |
+| star/genomegenerate            | 2.7.10a     | 2.7.11b     |
 | stringtie/stringtie            | 2.2.1       | 2.2.3       |
 
 ## 2.2.1 - Scrooge [2024-08-28]