add changelog

genomic-medicine-sweden · Oct 16, 2024 · 6e9227b · 6e9227b
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -9,6 +9,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 - Functionality to create DROP databases and to add samples to existing ones [#147](https://github.com/genomic-medicine-sweden/tomte/pull/147)
 - A switch `--skip_variant_calling` for variant calling [#169](https://github.com/genomic-medicine-sweden/tomte/pull/169)
+- Functionality to output DROP databases in references folder with a working sample annotation sheet [#172](https://github.com/genomic-medicine-sweden/tomte/pull/172)
 
 ### `Fixed`
 

diff --git a/modules/local/drop_put_together_exported_couts.nf b/modules/local/drop_put_together_exported_couts.nf
@@ -29,11 +29,11 @@ process DROP_PUT_TOGETHER_EXPORTED_COUNTS {
     """
     #!/bin/bash
     mkdir -p exported_counts
-    if ($ae_run) ;then
+    if [[ "$ae_run" == "true" ]];then
         cp ${exported_counts_ae}/* exported_counts/.
     fi
 
-    if ($as_run) ;then
+    if [[ "$as_run" == "true" ]];then
         cp ${exported_counts_as}/* exported_counts/.
     fi