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fix config
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Lucpen committed Oct 14, 2024
1 parent 2cba456 commit 8dda20d
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19 changes: 19 additions & 0 deletions nextflow.config
Original file line number Diff line number Diff line change
Expand Up @@ -287,6 +287,25 @@ validation {
command = "nextflow run $manifest.name -profile <docker/singularity/.../institute> --input samplesheet.csv --outdir <OUTDIR>"
fullParameter = "help_full"
showHiddenParameter = "show_hidden"
beforeText = """
\033[0;34m
\033[0;34m----------------------------------------------------
\033[0;34m _____ __ __ _____ _ _
\033[0;34m / ____| \\/ |/ ____| | | | |
\033[0;34m | | __| \\ / | (___ ______ | |_ ___ _ __ ___ | |_ ___
\033[0;34m | | |_ | |\\/| |\\___ \\ |______| | __/ _ \\| '_ ` _ \\| __/ _ \
\033[0;34m | |__| | | | |____) | | || (_) | | | | | | || __/
\033[0;34m \\_____|_| |_|_____/ \\__\\___/|_| |_| |_|\\__\\___|
\033[0;34m----------------------------------------------------
\033[0;34m
"""
afterText = """${manifest.doi ? "* The pipeline\n" : ""}${manifest.doi.tokenize(",").collect { " https://doi.org/${it.trim().replace('https://doi.org/','')}"}.join("\n")}${manifest.doi ? "\n" : ""}
* The nf-core framework
https://doi.org/10.1038/s41587-020-0439-x
* Software dependencies
https://github.com/${manifest.name}/blob/master/CITATIONS.md
"""

}

summary {
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