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try to fix ci.yml
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Lucpen committed Oct 13, 2024
1 parent ae78f60 commit b48fd64
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -44,8 +44,8 @@ jobs:
- isMaster: false
profile: "singularity"
parameters:
- "test,docker"
- "test,docker --skip_subsample_region true --skip_downsample true --skip_build_tracks true --skip_stringtie true --skip_vep true --skip_drop_ae true --skip_drop_as true"
- "docker"
- "docker --skip_subsample_region true --skip_downsample true --skip_build_tracks true --skip_stringtie true --skip_vep true --skip_drop_ae true --skip_drop_as true"
steps:
- name: Check out pipeline code
uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b # v4
Expand Down Expand Up @@ -85,4 +85,4 @@ jobs:

- name: "Run pipeline with test data ${{ matrix.NXF_VER }} | ${{ matrix.test_name }} | ${{ matrix.profile }}"
run: |
nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.test_name }},${{ matrix.profile }} --outdir ./results
nextflow run ${GITHUB_WORKSPACE} -profile ${{ matrix.test_name }},${{ matrix.parameters }} --outdir ./results

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