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Co-authored-by: Anders Jemt <jemten@users.noreply.github.com>
genomic-medicine-sweden · Nov 6, 2023 · cd90ccd · cd90ccd
1 parent 91e7ea0
commit cd90ccd
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
@@ -1,5 +1,5 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/genomic-medicine-sweden/tomte/releases/tag/0.1.0" target="_blank">genomic-medicine-sweden/tomte</a>
+  This report has been generated by the <a href="https://github.com/genomic-medicine-sweden/tomte/releases/tag/1.0.0" target="_blank">genomic-medicine-sweden/tomte</a>
   analysis pipeline. For information about how to interpret these results, please see the
   <a href="https://github.com/genomic-medicine-sweden/tomte/blob/master/docs/output.md" target="_blank">documentation</a>.
 report_section_order:

diff --git a/nextflow.config b/nextflow.config
@@ -252,7 +252,7 @@ manifest {
     description     = """Pipeline to analyse RNAseq from raredisease patients"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version = '0.1.0'
+    version = '1.0.0'
     doi             = ''
 }
 

diff --git a/subworkflows/local/alignment.nf b/subworkflows/local/alignment.nf
@@ -37,7 +37,7 @@ workflow ALIGNMENT {
         FASTP(ch_cat_fastq, [], false, false)
 
         ch_gtf = gtf.map { it -> [[:], it] }
-        STAR_ALIGN(FASTP.out.reads, star_index, ch_gtf, false, 'illumina', false)
+        STAR_ALIGN(FASTP.out.reads, star_index, ch_gtf, false, platform, false)
 
         SAMTOOLS_INDEX( STAR_ALIGN.out.bam )