CVA-244/variant interpretation logs (#39)

* feat: add post variant interpretation logs feature

* chore: bump version

pycipapi/cipapi_client.py

@@ -2,6 +2,7 @@
     CipApiOverview,
     CipApiCase,
     ClinicalReport,
+    VariantInterpretationLog,
     Referral,
     RequestStatus,
     InterpretationFlag,
@@ -126,6 +127,14 @@ def submit_clinical_report_raw(self, payload, partner_id, analysis_type, report_
         url = self.build_url(self.url_base, self.CR_ENDPOINT, partner_id, analysis_type, report_id) + '/'
         return self.post(url, payload, params=params)
 
+    def submit_variant_interpretation_logs_raw(self, payload, case_id, case_version, **params):
+        case_id_version = "{ir_id}-{ir_version}".format(
+            ir_id=case_id,
+            ir_version=case_version
+        )
+        url = self.build_url(self.url_base, self.IR_ENDPOINT, case_id_version, 'variant-interpretation-log') + '/'
+        return self.post(url, payload, params=params)
+
     def submit_interpretation_flags_raw(self, payload, case_id, case_version, **params):
         url = self.build_url(self.url_base, self.IR_ENDPOINT, case_id, case_version, 'interpretation-flags') + '/'
         return self.post(url, payload, params=params)
@@ -354,6 +363,17 @@ def submit_clinical_report(self, payload, partner_id, analysis_type, report_id,
         """
         return self.submit_clinical_report_raw(payload, partner_id, analysis_type, report_id, **params)
 
+    @returns_item(VariantInterpretationLog, multi=False)
+    def submit_variant_interpretation_logs(self, vils, case_id, case_version, **params):
+        """
+        :type vils: list
+        :type case_id: int
+        :type case_version: int
+        :rtype: VariantInterpretationLog
+        """
+        payload = {"log_entry": vils}
+        return self.submit_variant_interpretation_logs_raw(payload, case_id, case_version, **params)
+
     @returns_item(Referral, multi=True)
     def list_referral(self, **params):
         """

pycipapi/models.py

@@ -132,6 +132,12 @@ def __init__(self, **kwargs):
         self.timestamp = kwargs.get('timestamp')
 
 
+class VariantInterpretationLog(object):
+    def __init__(self, **kwargs):
+        self.case_updated = kwargs.get('case_updated')
+        self.log_entry = kwargs.get('log_entry').get('log_entry')
+
+
 class ExitQuestionnaire(object):
     def __init__(self, **kwargs):
         self.created_at = kwargs.get('created_at')

setup.py

@@ -2,7 +2,7 @@
 
 setup(
     name='pycipapi',
-    version='0.10.2',
+    version='0.11.0',
     packages=find_packages(),
     scripts=[],
     url='https://github.com/genomicsengland/pycipapi',