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v3.2.2
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@mariabernard mariabernard released this 08 Apr 12:37
· 53561 commits to master since this release
v3.2.2
6150f59

v3.2.2 [2021-04]

Tools added:

  • DESeq2 preprocess : Compute differential abundancy analysis
  • DESeq2 visualisation : Create table and plots to explore and illustrate the differential abundant OTUs
  • Filters has been splitted into to new tools : FROGS OTU Filters and FROGS Affiliations Filters.
    • FROGS OTU Filters filters OTU on presence/absence, abundances and contamination as Filters did. For contamination research, user may now use a personnal multifasta contaminant reference.
    • FROGS Affiliation Filters delete OTU or mask affiliation that do not respect affiliation metrics criteria, or affiliated to undesirable (partial) taxon.
  • FROGS datamanager is now available to manage affiliation reference database (frogs_db.loc for affiliation_OTU tool) thanks to @davidchristiany.

Contaminant database added

  • add Arabidopsis thaliana chroloroplast sequence

Modifications:

  • ITSx : add organism model option scanning, change default behavior regarding the trimming of conserved regions

  • Use english typo for normalise and visualise

  • rename phix_db.loc in contaminant_db.loc

  • update tool dependencies version

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