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1. smithlabcode/abismal smithlabcode/abismal Public

   Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.

   C++ 12 5

2. smithlabcode/falco smithlabcode/falco Public

   A C++ drop-in replacement of FastQC to assess the quality of sequence read data

   HTML 98 11

3. screamr screamr Public

   An R package for downstream analysis of scRNA-Seq data

   R

4. seqdiff seqdiff Public

   a program to estimate the difference between data from reads in a SAM file to its reference genome

   C++

5. methylation-ui methylation-ui Public

   A web interface to fetch DNA methylation datasets from SRA and facilitate obtaining high-quality bisulfite sequencing data

   JavaScript

6. docks_dot_cpp docks_dot_cpp Public

   A C++ implementation of the DOCKS algorithm from Orenstein et al 2016

   C++