add pbspro executor

hoelzer-lab · Feb 9, 2024 · 3945a7a · 3945a7a
1 parent 094be4d
commit 3945a7a
Showing 1 changed file with 14 additions and 0 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -130,6 +130,20 @@ profiles {
         process.cache = "lenient"
         includeConfig 'configs/nodes.config'
     }
+
+    pbspro {
+        executor {
+            name = "pbspro"
+            queueSize = params.setup ? 1 : 100
+            // exitReadTimeout = "360 sec"
+            // submitRateLimit = '1 / 2 s'
+            // pollInterval = '30 sec'
+        }
+        params.cloudProcess = true
+        process.cache = "lenient"
+        includeConfig 'configs/nodes.config'
+    }
+
 
     latency {
         executor {