Build script, build instructions, build statically

CMakeLists.txt

@@ -1,10 +1,10 @@
 project(Haploflow)
-
+set(Boost_USE_STATIC_LIBS ON)
 cmake_minimum_required(VERSION 2.8 FATAL_ERROR)
 
 set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
 
-find_package(Boost 1.55 COMPONENTS system filesystem program_options REQUIRED)
+find_package(Boost 1.54 COMPONENTS system filesystem program_options REQUIRED)
 
 include_directories(
 	${Boost_INCLUDE_DIRS}

README.md

@@ -7,15 +7,21 @@ This README lists the requirements, installation information and a short tutoria
 If using Haploflow, please cite:
 A. Fritz, A. Bremges, Z.-L. Deng, T.-R. Lesker, T. Ganzenmüller, F. Klawonn, A. Dilthey, A.C. McHardy, "Haploflow: strain-resolved viral genome assembly with applications to SARS-CoV-2 and HCMV", DOI to come 
 
-## Requirements
+## Build requirements
  - CMake >= 2.8
- - Boost >= 1.55
+ - Boost >= 1.54
 
 ## Installation
 First, clone this repository using `git clone` _address_, then enter the directory which you cloned Haploflow to and create a build folder,
 e.g. `mkdir build`. Enter this new directory and run cmake with `cd build; cmake ..`. This will create a Makefile which you can then run
-to create the Haploflow executable: `make`
-This should create a `haploflow` executable in your build directory.
+to create the Haploflow executable: `make`. This should create a `haploflow` executable in your build directory.
+When building on Ubuntu >= 14.04, build.sh will perform these steps, build a manpage and produce a tar file as build/haploflow.tar.gz
+
+## Installation
+The haploflow executable can be directly executed. If using the haploflow.tar.gz file, it can be unpacked (with tar xvf haploflow.tar.gz) 
+to / as user root, which will install the executable and man page in locations which should already be in the path / manpath. The tar.gz 
+file can also be unpacked to any other location (eg. home dir) and the executable run from that location.
+
 
 ## Short tutorial
 Using the executable you can show the help and parameters using `./haploflow --help`. This lists the parameters as follows:

build.sh

@@ -0,0 +1,22 @@
+#!/bin/bash
+
+echo "Build assumes Ubuntu >= 14.04"
+
+sudo apt install cmake libboost-all-dev ruby-ronn git build-essential
+
+DIR=`pwd`
+
+mkdir -p build
+cd build
+cmake ..
+make
+
+sudo cp haploflow /usr/local/bin
+
+cd ..
+ronn -r --pipe haploflow.md > haploflow.1
+mkdir -p /usr/local/man/man1
+sudo cp haploflow.1 /usr/local/man/man1
+
+cd /
+tar czvf $DIR/build/haploflow.tar.gz usr/local/bin/haploflow usr/local/man/man1/haploflow.1