Scripts for Orenza web server DB update/creation

A pipeline to create/update the ORENZA database in https://bioi2.i2bc.paris-saclay.fr/django/orenza/

Usage

Created for use on the I2BC cluster but easily adaptable. The main script is update.py with a wrapper for the I2BC cluster: update.sh

python3 update.py all

or

python3 update.sh

Name		Name	Last commit message	Last commit date
Latest commit History 44 Commits
LICENSE		LICENSE
README.md		README.md
__init__.py		__init__.py
config_example.yaml		config_example.yaml
customLog.py		customLog.py
db_orenza.sqlite3		db_orenza.sqlite3
download.py		download.py
link.py		link.py
parse.py		parse.py
populate.py		populate.py
scraping.py		scraping.py
update.py		update.py
update.sh		update.sh
utils.py		utils.py