Update catboost requirement (#254)

Updates the requirements on
[catboost](https://github.com/catboost/catboost) to permit the latest
version.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/catboost/catboost/releases">catboost's
releases</a>.</em></p>
<blockquote>
<h2>1.2.3</h2>
<h2>Python package</h2>
<ul>
<li>Support Python 3.12. <a
href="https://redirect.github.com/catboost/catboost/issues/2510">#2510</a></li>
<li>[Performance]: Fix ineffective loops in Cython. Significant speedups
(up to 3x) on dataset construction from data in C-order can be
expected.</li>
<li>[Performance]: Make features data initialization from C-order
<code>numpy.ndarray</code>s with <code>float32</code> data type
multithreaded. Significant speedups of 5x up to 10x (on CPUs with many
cores) can be expected. <a
href="https://redirect.github.com/catboost/catboost/issues/385">#385</a>,
<a
href="https://redirect.github.com/catboost/catboost/issues/2542">#2542</a></li>
<li>Save training metrics into the model metadata. So
<code>best_score_</code>, <code>evals_result_</code>,
<code>best_iteration_</code> model attributes now work after model
saving and loading. Can be removed by model metadata manipulation if
needed. <a
href="https://redirect.github.com/catboost/catboost/issues/1166">#1166</a></li>
<li>[Breaking change]. Support a separate boolean target type, now
<code>Class</code> predictions for models that have been trained with
boolean targets will also be boolean instead of <code>True</code>,
<code>False</code> strings as before. Such models will be incompatible
with the previous versions of CatBoost appliers. If you want the old
behavior convert your target to <code>False</code>, <code>True</code>
strings before training. <a
href="https://redirect.github.com/catboost/catboost/issues/1954">#1954</a></li>
<li>Restrict <code>jupyterlab</code> version for setup to 3.x for now.
Fixes <a
href="https://redirect.github.com/catboost/catboost/issues/2530">#2530</a></li>
<li><code>utils.read_cd</code>: Support CD files with non-increasing
column indices.</li>
<li>Make <code>log_cout</code>, <code>log_cerr</code> specification
consistent, avoid reset in recursive calls.</li>
<li>Late-initialize default values for <code>log_cout</code>,
<code>log_cerr</code>. <a
href="https://redirect.github.com/catboost/catboost/issues/2195">#2195</a></li>
<li>Add missing generated metrics: <code>Cox</code>,
<code>PairLogitPairwise</code>, <code>UserPerObjMetric</code>,
<code>SurvivalAft</code>.</li>
</ul>
<h2>New features</h2>
<ul>
<li>Support boolean target/labels type during training in Python and
Spark (in the latter case only when using <code>fit</code> with
<code>Pool</code> arguments) and <code>Class</code> prediction in
Python. <a
href="https://redirect.github.com/catboost/catboost/issues/1954">#1954</a></li>
<li>[Spark]: Support Spark 3.5.x.</li>
<li>[C/C++ applier]. Add functions for getting indices of features of
different types to C and C++ API. <a
href="https://redirect.github.com/catboost/catboost/issues/2568">#2568</a>.
Thanks to <a
href="https://github.com/nimusp"><code>@​nimusp</code></a>.</li>
<li>[C/C++ applier]. Add staged prediction functions to C API. <a
href="https://redirect.github.com/catboost/catboost/issues/2584">#2584</a>.
Thanks to <a
href="https://github.com/Mb-NextTime"><code>@​Mb-NextTime</code></a>.</li>
<li>[JVM applier]. Add loading CatBoostModel from a byte array to API.
<a
href="https://redirect.github.com/catboost/catboost/issues/2539">#2539</a></li>
<li>[Linux] Support CgroupsV2 when computing default number of threads
used in parallel computations. <a
href="https://redirect.github.com/catboost/catboost/issues/2519">#2519</a>.
Thanks to <a
href="https://github.com/elukey"><code>@​elukey</code></a>.</li>
<li>[CLI] Support printing <code>Auxiliary</code> columns by name in
evaluation result output. <a
href="https://redirect.github.com/catboost/catboost/issues/1659">#1659</a></li>
<li>Save training metrics into the model metadata. Can be removed by
model metadata manipulation if needed. <a
href="https://redirect.github.com/catboost/catboost/issues/1166">#1166</a></li>
</ul>
<h2>Build &amp; testing</h2>
<ul>
<li>[Windows]: Use <code>clang-cl</code> compiler and tools from Visual
Studio 2022 for the build without CUDA (build with CUDA still uses
standard Microsoft toolchain from Visual Studio 2019).</li>
<li>[macOS]: Pass <code>os.version</code> to <code>conan</code> host
settings to ensure version consistency.</li>
<li>[Linux aarch64]: Set <code>-mno-outline-atomics</code> for modern
versions of CLang and GCC to avoid unresolved symbols linking errors. <a
href="https://redirect.github.com/catboost/catboost/issues/2527">#2527</a></li>
<li>Added missing <code>CMakeLists</code> for unit tests for
<code>util</code>. <a
href="https://redirect.github.com/catboost/catboost/issues/2525">#2525</a></li>
</ul>
<h2>Bugfixes</h2>
<ul>
<li>[Performance]: Fix performance regression that could slow down
training on GPU by 50% on some datasets that had been introduced in
release 1.2. Thanks to <a
href="https://github.com/JeanPaulShapo"><code>@​JeanPaulShapo</code></a>.</li>
<li>[Python-package]: Fix segfault on Pool(data=None). <a
href="https://redirect.github.com/catboost/catboost/issues/2522">#2522</a></li>
<li>[Python-package]: Fix Python exception in <code>Pool()</code> when
<code>pairs_weight</code> is a numpy array. <a
href="https://redirect.github.com/catboost/catboost/issues/1913">#1913</a></li>
<li>[Python-package]: Fix segfault and other strange errors when
specifying custom logger with <code>__call__</code> method. <a
href="https://redirect.github.com/catboost/catboost/issues/2277">#2277</a></li>
<li>[Python-package]: Fix returning complex params in hyperparameter
search. <a
href="https://redirect.github.com/catboost/catboost/issues/1741">#1741</a>,
<a
href="https://redirect.github.com/catboost/catboost/issues/1833">#1833</a></li>
<li>[Python-package]: Fix ignored exceptions for missed metrics
descriptions on startup. This has not been visible to users but has been
making debugging more difficult.</li>
<li>[Python-package]: Fix misleading <code>Targets are required for
YetiRank loss function.</code> error in Cross validation. <a
href="https://redirect.github.com/catboost/catboost/issues/2083">#2083</a></li>
<li>[Python-package]: Fix <code>Pool.get_label()</code> returns constant
<code>True</code> for boolean labels. <a
href="https://redirect.github.com/catboost/catboost/issues/2133">#2133</a></li>
<li>[Python-package]: Copying models does not lose
<code>best_score_</code>, <code>evals_result_</code>,
<code>best_iteration_</code> attributes values anymore. <a
href="https://redirect.github.com/catboost/catboost/issues/1793">#1793</a></li>
<li>[Spark]: Fix hangs at the end of the training. <a
href="https://redirect.github.com/catboost/catboost/issues/2151">#2151</a></li>
<li><code>Precision</code> metric default value in the absense of
positive samples is changed to 0 and a warning is added
(similar to the behavior of <code>scikit-learn</code> implementation).
<a
href="https://redirect.github.com/catboost/catboost/issues/2422">#2422</a></li>
<li>Fix ignoring embedding features</li>
<li>Try to avoid hash collisions when computing group ids with datasets
with a lot of groups (may occur in datasets with around a 10^9
samples).</li>
<li>Fix Multiclass models export to C++ and Python code. <a
href="https://redirect.github.com/catboost/catboost/issues/2549">#2549</a></li>
<li>Fix dataset_statistics mode when no <code>Target</code> data is
available.</li>
<li>Fix <code>Error: can't proceed some features</code> error on GPU. <a
href="https://redirect.github.com/catboost/catboost/issues/1024">#1024</a></li>
<li>Fix <code>allow_const_label=True</code> for classification. <a
href="https://redirect.github.com/catboost/catboost/issues/1933">#1933</a></li>
<li>Add checking of approx and target dimensions for
<code>SurvivalAft</code> objective/metric.</li>
<li>Fix Focal loss derivatives sign. <a
href="https://redirect.github.com/catboost/catboost/issues/2563">#2563</a></li>
</ul>
</blockquote>
</details>
<details>
<summary>Changelog</summary>
<p><em>Sourced from <a
href="https://github.com/catboost/catboost/blob/master/RELEASE.md">catboost's
changelog</a>.</em></p>
<blockquote>
<h1>Release 1.2.3</h1>
<h2>Python package</h2>
<ul>
<li>Support Python 3.12. <a
href="https://redirect.github.com/catboost/catboost/issues/2510">#2510</a></li>
<li>[Performance]: Fix ineffective loops in Cython. Significant speedups
(up to 3x) on dataset construction from data in C-order can be
expected.</li>
<li>[Performance]: Make features data initialization from C-order
<code>numpy.ndarray</code>s with <code>float32</code> data type
multithreaded. Significant speedups of 5x up to 10x (on CPUs with many
cores) can be expected. <a
href="https://redirect.github.com/catboost/catboost/issues/385">#385</a>,
<a
href="https://redirect.github.com/catboost/catboost/issues/2542">#2542</a></li>
<li>Save training metrics into the model metadata. So
<code>best_score_</code>, <code>evals_result_</code>,
<code>best_iteration_</code> model attributes now work after model
saving and loading. Can be removed by model metadata manipulation if
needed. <a
href="https://redirect.github.com/catboost/catboost/issues/1166">#1166</a></li>
<li>[Breaking change]. Support a separate boolean target type, now
<code>Class</code> predictions for models that have been trained with
boolean targets will also be boolean instead of <code>True</code>,
<code>False</code> strings as before. Such models will be incompatible
with the previous versions of CatBoost appliers. If you want the old
behavior convert your target to <code>False</code>, <code>True</code>
strings before training. <a
href="https://redirect.github.com/catboost/catboost/issues/1954">#1954</a></li>
<li>Restrict <code>jupyterlab</code> version for setup to 3.x for now.
Fixes <a
href="https://redirect.github.com/catboost/catboost/issues/2530">#2530</a></li>
<li><code>utils.read_cd</code>: Support CD files with non-increasing
column indices.</li>
<li>Make <code>log_cout</code>, <code>log_cerr</code> specification
consistent, avoid reset in recursive calls.</li>
<li>Late-initialize default values for <code>log_cout</code>,
<code>log_cerr</code>. <a
href="https://redirect.github.com/catboost/catboost/issues/2195">#2195</a></li>
<li>Add missing generated metrics: <code>Cox</code>,
<code>PairLogitPairwise</code>, <code>UserPerObjMetric</code>,
<code>SurvivalAft</code>.</li>
</ul>
<h2>New features</h2>
<ul>
<li>Support boolean target/labels type during training in Python and
Spark (in the latter case only when using <code>fit</code> with
<code>Pool</code> arguments) and <code>Class</code> prediction in
Python. <a
href="https://redirect.github.com/catboost/catboost/issues/1954">#1954</a></li>
<li>[Spark]: Support Spark 3.5.x.</li>
<li>[C/C++ applier]. Add functions for getting indices of features of
different types to C and C++ API. <a
href="https://redirect.github.com/catboost/catboost/issues/2568">#2568</a>.
Thanks to <a
href="https://github.com/nimusp"><code>@​nimusp</code></a>.</li>
<li>[C/C++ applier]. Add staged prediction functions to C API. <a
href="https://redirect.github.com/catboost/catboost/issues/2584">#2584</a>.
Thanks to <a
href="https://github.com/Mb-NextTime"><code>@​Mb-NextTime</code></a>.</li>
<li>[JVM applier]. Add loading CatBoostModel from a byte array to API.
<a
href="https://redirect.github.com/catboost/catboost/issues/2539">#2539</a></li>
<li>[Linux] Support CgroupsV2 when computing default number of threads
used in parallel computations. <a
href="https://redirect.github.com/catboost/catboost/issues/2519">#2519</a>.
Thanks to <a
href="https://github.com/elukey"><code>@​elukey</code></a>.</li>
<li>[CLI] Support printing <code>Auxiliary</code> columns by name in
evaluation result output. <a
href="https://redirect.github.com/catboost/catboost/issues/1659">#1659</a></li>
<li>Save training metrics into the model metadata. Can be removed by
model metadata manipulation if needed. <a
href="https://redirect.github.com/catboost/catboost/issues/1166">#1166</a></li>
</ul>
<h2>Build &amp; testing</h2>
<ul>
<li>[Windows]: Use <code>clang-cl</code> from Visual Studio 2022 for the
build without CUDA (build with CUDA still uses standard Microsoft
toolchain from Visual Studio 2019).</li>
<li>[macOS]: Pass <code>os.version</code> to <code>conan</code> host
settings to ensure version consistency.</li>
<li>[Linux aarch64]: Set <code>-mno-outline-atomics</code> for modern
versions of CLang and GCC to avoid unresolved symbols linking errors. <a
href="https://redirect.github.com/catboost/catboost/issues/2527">#2527</a></li>
<li>Added missing <code>CMakeLists</code> for unit tests for
<code>util</code>. <a
href="https://redirect.github.com/catboost/catboost/issues/2525">#2525</a></li>
</ul>
<h2>Bugfixes</h2>
<ul>
<li>[Performance]: Fix performance regression that could slow down
training on GPU by 50% on some datasets that had been introduced in
release 1.2. Thanks to <a
href="https://github.com/JeanPaulShapo"><code>@​JeanPaulShapo</code></a>.</li>
<li>[Python-package]: Fix segfault on Pool(data=None). <a
href="https://redirect.github.com/catboost/catboost/issues/2522">#2522</a></li>
<li>[Python-package]: Fix Python exception in <code>Pool()</code> when
<code>pairs_weight</code> is a numpy array. <a
href="https://redirect.github.com/catboost/catboost/issues/1913">#1913</a></li>
<li>[Python-package]: Fix segfault and other strange errors when
specifying custom logger with <code>__call__</code> method. <a
href="https://redirect.github.com/catboost/catboost/issues/2277">#2277</a></li>
<li>[Python-package]: Fix returning complex params in hyperparameter
search. <a
href="https://redirect.github.com/catboost/catboost/issues/1741">#1741</a>,
<a
href="https://redirect.github.com/catboost/catboost/issues/1833">#1833</a></li>
<li>[Python-package]: Fix ignored exceptions for missed metrics
descriptions on startup. This has not been visible to users but has been
making debugging more difficult.</li>
<li>[Python-package]: Fix misleading <code>Targets are required for
YetiRank loss function.</code> error in Cross validation. <a
href="https://redirect.github.com/catboost/catboost/issues/2083">#2083</a></li>
<li>[Python-package]: Fix <code>Pool.get_label()</code> returns constant
<code>True</code> for boolean labels. <a
href="https://redirect.github.com/catboost/catboost/issues/2133">#2133</a></li>
<li>[Python-package]: Copying models does not lose
<code>best_score_</code>, <code>evals_result_</code>,
<code>best_iteration_</code> attributes values anymore. <a
href="https://redirect.github.com/catboost/catboost/issues/1793">#1793</a></li>
<li>[Spark]: Fix hangs at the end of the training. <a
href="https://redirect.github.com/catboost/catboost/issues/2151">#2151</a></li>
<li><code>Precision</code> metric default value in the absense of
positive samples is changed to 0 and a warning is added
(similar to the behavior of <code>scikit-learn</code> implementation).
<a
href="https://redirect.github.com/catboost/catboost/issues/2422">#2422</a></li>
<li>Fix ignoring embedding features</li>
<li>Try to avoid hash collisions when computing group ids with datasets
with a lot of groups (may occur in datasets with around a 10^9
samples).</li>
<li>Fix Multiclass models export to C++ and Python code. <a
href="https://redirect.github.com/catboost/catboost/issues/2549">#2549</a></li>
<li>Fix dataset_statistics mode when no <code>Target</code> data is
available.</li>
<li>Fix <code>Error: can't proceed some features</code> error on GPU. <a
href="https://redirect.github.com/catboost/catboost/issues/1024">#1024</a></li>
<li>Fix <code>allow_const_label=True</code> for classification. <a
href="https://redirect.github.com/catboost/catboost/issues/1933">#1933</a></li>
<li>Add checking of approx and target dimensions for
<code>SurvivalAft</code> objective/metric.</li>
</ul>
<!-- raw HTML omitted -->
</blockquote>
<p>... (truncated)</p>
</details>
<details>
<summary>Commits</summary>
<ul>
<li><a
href="https://github.com/catboost/catboost/commit/fe0941b208f9c392ce788c314463b6816d335c6a"><code>fe0941b</code></a>
Use paths from CMAKE_*_DIR when running in open source to avoid issues
on Win...</li>
<li><a
href="https://github.com/catboost/catboost/commit/cf282f73707cbfaca6a8976693a317bf942d1a90"><code>cf282f7</code></a>
CatBoost release 1.2.3.</li>
<li><a
href="https://github.com/catboost/catboost/commit/ec263e7d0e4ed96a39820d1cee9d8f205a0624d4"><code>ec263e7</code></a>
Update contrib/python/ipywidgets/py3 to 8.1.2</li>
<li><a
href="https://github.com/catboost/catboost/commit/704a5d8ba26afdcd4fd28842dcdd7541b176531e"><code>704a5d8</code></a>
Intermediate changes</li>
<li><a
href="https://github.com/catboost/catboost/commit/a13b5ba1b650cf68e6129a165d3fa144642bc132"><code>a13b5ba</code></a>
Add loading CatBoostModel from a byte array to API.. Fix <a
href="https://redirect.github.com/catboost/catboost/issues/2539">#2539</a></li>
<li><a
href="https://github.com/catboost/catboost/commit/56a0b44e8529920def3db9f5a13204bdb8c37cbe"><code>56a0b44</code></a>
Add Get*FeaturesIndices to C++ wrapper. <a
href="https://redirect.github.com/catboost/catboost/issues/2323">#2323</a>,
<a
href="https://redirect.github.com/catboost/catboost/issues/2568">#2568</a></li>
<li><a
href="https://github.com/catboost/catboost/commit/caed72b46db0f4de9cb92b4e12195e683579ce36"><code>caed72b</code></a>
Add GetEmbeddingFeaturesCount() to C++ wrapper</li>
<li><a
href="https://github.com/catboost/catboost/commit/4490314cac96e0aacb0925483042db6287b091f4"><code>4490314</code></a>
Add Spark 3.5 to pyspark_wrapper_generator.</li>
<li><a
href="https://github.com/catboost/catboost/commit/98c36676fed9e44892b5f228166694b2f71e1cec"><code>98c3667</code></a>
Support boolean target type in Spark (where possible).</li>
<li><a
href="https://github.com/catboost/catboost/commit/ad980dac979d2d8b4d633dffab06cb2e7303c126"><code>ad980da</code></a>
Manually unroll the loop</li>
<li>Additional commits viewable in <a
href="https://github.com/catboost/catboost/compare/v1.1...v1.2.3">compare
view</a></li>
</ul>
</details>
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pyproject.toml

@@ -65,6 +65,12 @@ dev = [
     "isort>=5.12.0",
     "codespell>=2.2.4",
     "ruff>=0.2.2",
+    "lightgbm>=3.3.0",
+    # https://github.com/catboost/catboost/issues/2371
+    "catboost>=1.2 ; python_version != '3.8'",
+    "catboost<1.2 ; python_version == '3.8'",
+    "xgboost>=1.5.0",
+    "scipy>=1.4.0",
 ]
 docs = [
     "mkdocs>=1.5.3",
@@ -73,16 +79,9 @@ docs = [
     "mkdocstrings>=0.24.1",
     "mkdocstrings-python>=1.8.0",
 ]
-extras = [
-    "lightgbm>=3.3.0",
-    # https://github.com/catboost/catboost/issues/2371
-    "catboost<1.2 ; python_version == '3.8'",
-    "catboost>=1.1 ; python_version != '3.8'",
-    "xgboost>=1.5.0",
-    "scipy>=1.4.0",
-]
+
 # Separating these allow for more install flexibility.
-all = ["probatus[dev,docs,extras]"]
+all = ["probatus[dev,docs]"]
 
 [tool.setuptools.packages.find]
 exclude = ["tests", "notebooks", "docs"]
@@ -131,4 +130,4 @@ extend_skip = ["__init__.py", "docs"]
 skip = "**.egg-info*"
 
 [tool.black]
-line-length = 120
+line-length = 120