v0.5.0 release

[leoisl]

[0.5.0] - 2023-07-18

Fixed

• Properly handling Ns in the MSA, and in the denovo sequences (see PR #60
  and PR #61 for more details);

Changed

• scikit-learn, numpy and pytest dependencies updated;
• The KMeans algorithm used is now elkan;

[codecov]

Codecov Report

Merging #63 (55ca0ec) into master (80aca37) will increase coverage by 0.00%.
The diff coverage is 100.00%.

@@           Coverage Diff           @@
##           master      #63   +/-   ##
=======================================
  Coverage   99.73%   99.73%           
=======================================
  Files          18       18           
  Lines        1494     1528   +34     
=======================================
+ Hits         1490     1524   +34     
  Misses          4        4           

Impacted Files	Coverage Δ
make_prg/from_msa/cluster_sequences.py	100.00% <100.00%> (ø)
make_prg/update/denovo_variants.py	100.00% <100.00%> (ø)
make_prg/utils/io_utils.py	98.41% <100.00%> (+0.23%)	⬆️
make_prg/utils/seq_utils.py	100.00% <100.00%> (ø)