Version 0.3.0
- add option to not use maxmatch option with nucmer, for big genomes
- expose minimap2 and nucmer threads options
- improved handling of indels, in particular fixes a bug where FP indels could be called as TP, and also now uses current latest mummer version 4.0.0rc1 for better variant calls for recall.
- small bug fixes: handle whitespace in fasta header lines, non-ACGT characters, and lowercase characters