removing python 3.8 and 3.9 from workflows #142
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: CI | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| build-macos: | |
| runs-on: macOS-latest | |
| strategy: | |
| matrix: | |
| # python-version: [3.5, 3.6, 3.7, 3.8] | |
| python-version: [3.9, 3.10] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v1 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| export FC=gfortran | |
| export F77=gfortran | |
| brew install cmake hdf5-mpi | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install --upgrade numpy mpi4py h5py | |
| pip install flake8 pytest | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Build | |
| run: | | |
| export PATH="/usr/local/opt/hdf5-parallel/bin:$PATH" | |
| export LDFLAGS="-L/usr/local/opt/hdf5-parallel/lib" | |
| export CPPFLAGS="-I/usr/local/opt/hdf5-parallel/include" | |
| export CC=mpicc | |
| export CXX=mpicxx | |
| python -m pip install -v . | |
| - name: Test import | |
| run: | | |
| python -m pip show -f neuroh5 | |
| python ./tests/test_import.py | |
| - name: Test read and write | |
| run: | | |
| python ./tests/test_write_cell_attr.py | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.9, 3.10] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt update -y && sudo apt upgrade | |
| sudo apt install build-essential cmake mpich libhdf5-mpich-dev | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install --upgrade numpy mpi4py h5py | |
| pip install flake8 pytest | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Build | |
| run: | | |
| python -m pip install -v . | |
| - name: Test import | |
| run: | | |
| python -m pip show -f neuroh5 | |
| python ./tests/test_import.py | |
| - name: Test read and write | |
| run: | | |
| python ./tests/test_write_cell_attr.py |