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removing python 3.8 and 3.9 from workflows #142

removing python 3.8 and 3.9 from workflows

removing python 3.8 and 3.9 from workflows #142

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: CI
on:
push:
branches: [ master ]
pull_request:
branches: [ master ]
jobs:
build-macos:
runs-on: macOS-latest
strategy:
matrix:
# python-version: [3.5, 3.6, 3.7, 3.8]
python-version: [3.9, 3.10]
steps:
- name: Checkout
uses: actions/checkout@v1
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
export FC=gfortran
export F77=gfortran
brew install cmake hdf5-mpi
python -m pip install --upgrade pip setuptools wheel
python -m pip install --upgrade numpy mpi4py h5py
pip install flake8 pytest
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: Build
run: |
export PATH="/usr/local/opt/hdf5-parallel/bin:$PATH"
export LDFLAGS="-L/usr/local/opt/hdf5-parallel/lib"
export CPPFLAGS="-I/usr/local/opt/hdf5-parallel/include"
export CC=mpicc
export CXX=mpicxx
python -m pip install -v .
- name: Test import
run: |
python -m pip show -f neuroh5
python ./tests/test_import.py
- name: Test read and write
run: |
python ./tests/test_write_cell_attr.py
build-linux:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.9, 3.10]
steps:
- name: Checkout
uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
sudo apt update -y && sudo apt upgrade
sudo apt install build-essential cmake mpich libhdf5-mpich-dev
python -m pip install --upgrade pip setuptools wheel
python -m pip install --upgrade numpy mpi4py h5py
pip install flake8 pytest
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: Build
run: |
python -m pip install -v .
- name: Test import
run: |
python -m pip show -f neuroh5
python ./tests/test_import.py
- name: Test read and write
run: |
python ./tests/test_write_cell_attr.py