removed unnecessary checkpoints

lareaulab · Aug 18, 2023 · 2fc2892 · 2fc2892
1 parent a389b84
commit 2fc2892
Showing 1 changed file with 1 addition and 5 deletions.
diff --git a/psix/junctions2psi.py b/psix/junctions2psi.py
@@ -233,12 +233,8 @@ def junctions_dir_to_psi(
         if len(cell_list) == 0:
             cell_list = psi.columns
         mrna = tpm2mrna(tpm_file, cell_list, dtype=dtype)
-        ##### New thing
-        self.mrna_checkpoint = mrna
-        self.psi_checkpoint = psi
-        self.constitutive_sj_checkpoint = constitutive_sj
+
         cells = psi.columns.intersection(mrna.columns)
-        self.cells_checkpoint = cells
         mrna = mrna[cells]
         psi = psi[cells]
         constitutive_sj = constitutive_sj[cells]