build: Bump nixpkgs #763
Workflow file for this run
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| name: Pull request | |
| on: | |
| pull_request: | |
| types: [opened, reopened, synchronize] | |
| jobs: | |
| lint: | |
| name: Lint content | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b # v4.1.5 | |
| with: | |
| fetch-depth: 0 # Enable gitlint to check all PR commit messages | |
| - uses: cachix/install-nix-action@8887e596b4ee1134dae06b98d573bd674693f47c # v26 | |
| - uses: cachix/cachix-action@18cf96c7c98e048e10a83abd92116114cd8504be # v14 | |
| with: | |
| name: linz | |
| authToken: "${{ secrets.CACHIX_AUTH_TOKEN }}" | |
| - name: Cache pre-commit | |
| uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 # v4.0.2 | |
| with: | |
| path: ~/.cache/pre-commit | |
| key: | |
| ${{ secrets.CACHE_SEED }}-${{ hashFiles('.pre-commit-config.yaml') | |
| }} | |
| - name: Run pre-commit hooks | |
| run: nix-shell --pure --run 'pre-commit run --all-files' | |
| - name: Check all commit messages in Pull Request | |
| run: | |
| nix-shell --pure --run 'gitlint --commits origin/${{ github.base_ref | |
| }}..${{ github.event.pull_request.head.sha }}' | |
| test-machine-readable-to-human-readable-date-time: | |
| name: Test machine readable to human-readable date/time using Nix | |
| runs-on: ubuntu-22.04 | |
| defaults: | |
| run: | |
| working-directory: machine-readable-to-human-readable-date-time | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b # v4.1.5 | |
| - uses: cachix/install-nix-action@8887e596b4ee1134dae06b98d573bd674693f47c # v26 | |
| - uses: cachix/cachix-action@18cf96c7c98e048e10a83abd92116114cd8504be # v14 | |
| with: | |
| name: linz | |
| authToken: "${{ secrets.CACHIX_AUTH_TOKEN }}" | |
| - name: Run test | |
| run: nix-shell --pure --run 'LC_MESSAGES=C TZ=UTC mocha' | |
| test-sentinel-water-extraction-nix: | |
| name: Test Sentinel-${{ matrix.sentinel }} using Nix | |
| runs-on: ubuntu-22.04 | |
| defaults: | |
| run: | |
| working-directory: | |
| flooding/sentinel${{ matrix.sentinel }}_water_extraction | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| sentinel: | |
| - "1" | |
| - "2" | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b # v4.1.5 | |
| - uses: cachix/install-nix-action@8887e596b4ee1134dae06b98d573bd674693f47c # v26 | |
| - uses: cachix/cachix-action@18cf96c7c98e048e10a83abd92116114cd8504be # v14 | |
| with: | |
| name: linz | |
| authToken: "${{ secrets.CACHIX_AUTH_TOKEN }}" | |
| - name: Run test | |
| run: | |
| nix-shell --pure --run 'jupyter nbconvert --debug --execute --inplace | |
| --to=notebook sentinel${{ matrix.sentinel }}_water_extraction.ipynb' | |
| test-sentinel-water-extraction-poetry: | |
| name: | |
| Test Sentinel-${{ matrix.sentinel }} on ${{ matrix.runner }}, using Poetry | |
| with Python ${{ matrix.python }} | |
| runs-on: ${{ matrix.runner }} | |
| defaults: | |
| run: | |
| shell: bash --login -o errexit {0} # https://github.com/conda-incubator/setup-miniconda/tree/7e642bb2e4ca56ff706818a0febf72bb226d348d#use-a-default-shell | |
| working-directory: | |
| flooding/sentinel${{ matrix.sentinel }}_water_extraction | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| runner: | |
| - macos-12 | |
| - ubuntu-22.04 | |
| - windows-2022 | |
| python: | |
| - "3.9" | |
| - "3.11" | |
| sentinel: | |
| - "1" | |
| - "2" | |
| include: | |
| - runner: macos-12 | |
| pip-cache-dir: ~/Library/Caches/pip | |
| - runner: ubuntu-22.04 | |
| pip-cache-dir: ~/.cache/pip | |
| - runner: windows-2022 | |
| pip-cache-dir: ~\AppData\Local\pip\Cache | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@44c2b7a8a4ea60a981eaca3cf939b5f4305c123b # v4.1.5 | |
| - name: Cache pip packages | |
| uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 # v4.0.2 | |
| with: | |
| path: ${{ matrix.pip-cache-dir }} | |
| key: | |
| ${{ runner.os }}-pip-${{ secrets.CACHE_SEED }}-${{ matrix.python | |
| }}-${{ hashFiles('./flooding/sentinel${{ matrix.sentinel | |
| }}_water_extraction/poetry.lock') }} | |
| restore-keys: | |
| ${{ runner.os }}-pip-${{ secrets.CACHE_SEED }}-${{ matrix.python }} | |
| - name: Cache Conda packages | |
| uses: actions/cache@0c45773b623bea8c8e75f6c82b208c3cf94ea4f9 # v4.0.2 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ secrets.CACHE_SEED }}-${{ matrix.python | |
| }} | |
| - name: Get GDAL Python package version | |
| run: | | |
| GDAL_VERSION="$(grep --max-count=1 --only-matching 'file = "GDAL-.*\.tar\.gz"' poetry.lock)" | |
| # Use character removal compatible with macOS 12 | |
| GDAL_VERSION="${GDAL_VERSION#?????????????}" | |
| GDAL_VERSION="${GDAL_VERSION%????????}" | |
| echo "GDAL_VERSION=$GDAL_VERSION" >> $GITHUB_ENV | |
| - name: Setup Conda | |
| uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca # v3.0.4 | |
| with: | |
| channels: conda-forge | |
| python-version: ${{ matrix.python }} | |
| - name: Install Conda environment packages | |
| run: conda install --channel=conda-forge --quiet --yes gdal=${{ | |
| env.GDAL_VERSION }} poetry=1.3.2 # Workaround for https://github.com/python-poetry/poetry/issues/7589 | |
| - name: Install Python packages on non-Windows runner | |
| run: poetry install --only=main --no-root | |
| if: ${{ !startsWith(runner.os, 'Windows') }} | |
| - name: | |
| Install Python packages on Windows runner (Workaround for | |
| https://github.com/python-poetry/poetry/issues/1031) | |
| uses: nick-fields/retry@7152eba30c6575329ac0576536151aca5a72780e # v3.0.0 | |
| with: | |
| timeout_minutes: 9999 # Workaround for https://github.com/nick-fields/retry/issues/107 | |
| max_attempts: 6 | |
| command: bash --login -o errexit -c 'cd flooding/sentinel${{ | |
| matrix.sentinel }}_water_extraction && poetry install --only=main | |
| --no-root' # Workaround for https://github.com/python-poetry/poetry/issues/7363 / https://github.com/nick-fields/retry/issues/89 | |
| shell: bash | |
| if: ${{ startsWith(runner.os, 'Windows') }} | |
| - name: Run test | |
| run: | |
| poetry run jupyter nbconvert --debug --execute --inplace --to=notebook | |
| sentinel${{ matrix.sentinel }}_water_extraction.ipynb | |
| finalise: | |
| if: always() | |
| needs: | |
| - lint | |
| - test-machine-readable-to-human-readable-date-time | |
| - test-sentinel-water-extraction-nix | |
| - test-sentinel-water-extraction-poetry | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Decide whether the needed jobs succeeded or failed | |
| uses: re-actors/alls-green@05ac9388f0aebcb5727afa17fcccfecd6f8ec5fe # v1.2.2 | |
| with: | |
| jobs: ${{ toJSON(needs) }} |