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pyseer v1.3.8
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@mgalardini mgalardini released this 25 May 13:13
· 79 commits to master since this release
1.3.8
2e27979

v1.3.8 (May 2020)

  • Improvement: fall back to Firth regression when encountering a matrix inversion error (thanks to Julian Libiseller-Egger)
  • Bugfix: check for zero passing variants in read_all (enet, thanks to Julian Libiseller-Egger)
  • Bugfix: use len(all_strains) instead of len(sample_order) to determine shape of sparse matrix in load_all_vars (enet, thanks to Julian Libiseller-Egger)
  • Bugfix: properly report all filtered variants
  • Bugfix: --lmm requires either --similarity or a LMM cache
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