Updated call of PACVr.calcCoverage()

michaelgruenstaeudl · Feb 20, 2024 · 7424cf3 · 7424cf3
1 parent 8f0b2e3
commit 7424cf3
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/R/PACVr.R b/R/PACVr.R
@@ -146,8 +146,8 @@ PACVr.complete <- function(gbkFile,
 
   ###################################
   coverage <- PACVr.calcCoverage(bamFile,
-                                 windowSize,
-                                 logScale)
+                                 analysisSpecs$windowSize,
+                                 plotSpecs$logScale)
 
   ###################################
   if (verbose) {