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Generic printCovStats #29

Merged
merged 20 commits into from
Feb 10, 2024
Merged

Generic printCovStats #29

merged 20 commits into from
Feb 10, 2024

Commits on Feb 6, 2024

  1. Exception handling no longer needed due to checkFeatureQualifiers

    @alephnull7
    alephnull7 committed Feb 6, 2024
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  2. Exception handling no longer needed due to checkFeatureQualifiers

    @alephnull7
    alephnull7 committed Feb 6, 2024
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Commits on Feb 7, 2024

  1. Rename verboseInformation as printCovStats

    @alephnull7
    alephnull7 committed Feb 7, 2024
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  2. Rename writeTables as printCovValsAsTable

    @alephnull7
    alephnull7 committed Feb 7, 2024
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  3. changing CovStats outfile ending

    @michaelgruenstaeudl @alephnull7
    michaelgruenstaeudl authored and alephnull7 committed Feb 7, 2024
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  4. Merge remote-tracking branch 'michael/master'

    @alephnull7
    alephnull7 committed Feb 7, 2024
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Commits on Feb 8, 2024

  1. Change Band for source to seqnames (organism qualifier)

    @alephnull7
    alephnull7 committed Feb 8, 2024
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  2. Refactor printCovValsAsTable

    @alephnull7
    alephnull7 committed Feb 8, 2024
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  3. Remove verbose functions to own file

    @alephnull7
    alephnull7 committed Feb 8, 2024
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  4. Move read.gb data transformation functions to own file

    @alephnull7
    alephnull7 committed Feb 8, 2024
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Commits on Feb 9, 2024

  1. Fix Chromosone typo

    @alephnull7
    alephnull7 committed Feb 9, 2024
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  2. Naming of table columns determined by covData

    @alephnull7
    alephnull7 committed Feb 9, 2024
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  3. Unconditional call of printCovStats

    @alephnull7
    alephnull7 committed Feb 9, 2024
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  4. Refactor of PACVr.verboseInformation and printCovStats

    @alephnull7
    alephnull7 committed Feb 9, 2024
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  5. printCovValsAsTable called from PACVr.verboseInformation

    @alephnull7
    alephnull7 committed Feb 9, 2024
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  6. printCovValsAsTable called from PACVr.verboseInformation

    @alephnull7
    alephnull7 committed Feb 9, 2024
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  7. Documentation updated for generalized printCovStats

    @alephnull7
    alephnull7 committed Feb 9, 2024
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  8. Update documentation

    @alephnull7
    alephnull7 committed Feb 9, 2024
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  9. Collapse printCovValsAsTable into printCovStats

    @alephnull7
    alephnull7 committed Feb 9, 2024
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  10. Refactor writeCovTables

    @alephnull7
    alephnull7 committed Feb 9, 2024
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