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regen for 7.6.2
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turbomam committed Jun 9, 2023
1 parent 6b7c5dc commit 46e9b80
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Showing 15 changed files with 16,868 additions and 16,885 deletions.
28 changes: 14 additions & 14 deletions examples/output/Database-functional-annotations.ttl
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Original file line number Diff line number Diff line change
Expand Up @@ -2,33 +2,33 @@

[] a nmdc:Database ;
nmdc:functional_annotation_set [ a nmdc:FunctionalAnnotation ;
nmdc:has_function "KEGG.REACTION:R00100" ],
[ a nmdc:FunctionalAnnotation ;
nmdc:has_function "TIGRFAM:TIGR00010" ],
nmdc:has_function "EC:1.1.1.1" ],
[ a nmdc:FunctionalAnnotation ;
nmdc:has_function "MetaCyc:RXN-14904" ],
nmdc:has_function "GO:0032571" ],
[ a nmdc:FunctionalAnnotation ;
nmdc:has_function "RHEA:12345" ],
nmdc:has_function "CATH:1.10.10.200" ],
[ a nmdc:FunctionalAnnotation ;
nmdc:has_function "KEGG.ORTHOLOGY:K00001" ],
[ a nmdc:FunctionalAnnotation ;
nmdc:has_function "MetaNetX:MNXR101574" ],
nmdc:has_function "MetaCyc:RXN-14904" ],
[ a nmdc:FunctionalAnnotation ;
nmdc:has_function "EC:1.1.1.1" ],
nmdc:has_function "KEGG_PATHWAY:rsk00410" ],
[ a nmdc:FunctionalAnnotation ;
nmdc:has_function "GO:0032571" ],
nmdc:has_function "KEGG.REACTION:R00100" ],
[ a nmdc:FunctionalAnnotation ;
nmdc:has_function "CATH:1.10.10.200" ],
nmdc:has_function "RHEA:12345" ],
[ a nmdc:FunctionalAnnotation ;
nmdc:has_function "TIGRFAM:TIGR00010" ],
[ a nmdc:FunctionalAnnotation ;
nmdc:has_function "EGGNOG:veNOG12876" ],
[ a nmdc:FunctionalAnnotation ;
nmdc:has_function "PFAM:PF11779" ],
nmdc:has_function "SUPFAM:SSF57615" ],
[ a nmdc:FunctionalAnnotation ;
nmdc:has_function "PANTHER.FAMILY:PTHR12345" ],
nmdc:has_function "SEED:Biotin_biosynthesis" ],
[ a nmdc:FunctionalAnnotation ;
nmdc:has_function "SUPFAM:SSF57615" ],
nmdc:has_function "PFAM:PF11779" ],
[ a nmdc:FunctionalAnnotation ;
nmdc:has_function "KEGG_PATHWAY:rsk00410" ],
nmdc:has_function "PANTHER.FAMILY:PTHR12345" ],
[ a nmdc:FunctionalAnnotation ;
nmdc:has_function "SEED:Biotin_biosynthesis" ] .
nmdc:has_function "MetaNetX:MNXR101574" ] .

40 changes: 20 additions & 20 deletions examples/output/Database-mags-activities.ttl
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Original file line number Diff line number Diff line change
Expand Up @@ -17,17 +17,6 @@ nmdc:wfmag-99-5MiDJM a nmdc:MagsAnalysisActivity ;
nmdc:input_contig_num 169782 ;
nmdc:low_depth_contig_num 0 ;
nmdc:mags_list [ a nmdc:MagBin ;
nmdc:bin_name "bins.1" ;
nmdc:bin_quality "LQ" ;
nmdc:completeness "11.42"^^xsd:float ;
nmdc:contamination "0.21"^^xsd:float ;
nmdc:gene_count 250 ;
nmdc:num_16s 0 ;
nmdc:num_23s 0 ;
nmdc:num_5s 1 ;
nmdc:num_t_rna 1 ;
nmdc:number_of_contig 52 ],
[ a nmdc:MagBin ;
nmdc:bin_name "bins.2" ;
nmdc:bin_quality "LQ" ;
nmdc:completeness "51.25"^^xsd:float ;
Expand All @@ -48,7 +37,18 @@ nmdc:wfmag-99-5MiDJM a nmdc:MagsAnalysisActivity ;
nmdc:num_23s 0 ;
nmdc:num_5s 0 ;
nmdc:num_t_rna 1 ;
nmdc:number_of_contig 11 ] ;
nmdc:number_of_contig 11 ],
[ a nmdc:MagBin ;
nmdc:bin_name "bins.1" ;
nmdc:bin_quality "LQ" ;
nmdc:completeness "11.42"^^xsd:float ;
nmdc:contamination "0.21"^^xsd:float ;
nmdc:gene_count 250 ;
nmdc:num_16s 0 ;
nmdc:num_23s 0 ;
nmdc:num_5s 1 ;
nmdc:num_t_rna 1 ;
nmdc:number_of_contig 52 ] ;
nmdc:name "MAGs activiity 1781_86101" ;
nmdc:started_at_time "2021-01-10T00:00:00+00:00"^^xsd:dateTime ;
nmdc:too_short_contig_num 159810 ;
Expand All @@ -71,26 +71,26 @@ nmdc:wfmag-99-VOgM5i a nmdc:MagsAnalysisActivity ;
nmdc:input_contig_num 78376 ;
nmdc:low_depth_contig_num 0 ;
nmdc:mags_list [ a nmdc:MagBin ;
nmdc:bin_name "bins.2" ;
nmdc:bin_name "bins.1" ;
nmdc:bin_quality "LQ" ;
nmdc:completeness "0.0"^^xsd:float ;
nmdc:completeness "25.86"^^xsd:float ;
nmdc:contamination "0.0"^^xsd:float ;
nmdc:gene_count 383 ;
nmdc:gene_count 401 ;
nmdc:num_16s 0 ;
nmdc:num_23s 0 ;
nmdc:num_5s 0 ;
nmdc:num_t_rna 5 ;
nmdc:num_t_rna 4 ;
nmdc:number_of_contig 74 ],
[ a nmdc:MagBin ;
nmdc:bin_name "bins.1" ;
nmdc:bin_name "bins.2" ;
nmdc:bin_quality "LQ" ;
nmdc:completeness "25.86"^^xsd:float ;
nmdc:completeness "0.0"^^xsd:float ;
nmdc:contamination "0.0"^^xsd:float ;
nmdc:gene_count 401 ;
nmdc:gene_count 383 ;
nmdc:num_16s 0 ;
nmdc:num_23s 0 ;
nmdc:num_5s 0 ;
nmdc:num_t_rna 4 ;
nmdc:num_t_rna 5 ;
nmdc:number_of_contig 74 ],
[ a nmdc:MagBin ;
nmdc:bin_name "bins.3" ;
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12 changes: 6 additions & 6 deletions examples/output/Study-exhaustive.ttl
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Expand Up @@ -64,16 +64,16 @@ nmdc:sty-11-ab a nmdc:Study ;
"any string 2" ;
nmdc:specific_ecosystem "unconstrained text" ;
nmdc:study_image [ a nmdc:ImageValue ;
dcterms:description "Photo of Craig Venter Institute, Rockville, Maryland" ;
nmdc:display_order "1" ;
nmdc:has_raw_value "https://upload.wikimedia.org/wikipedia/commons/8/86/J._Craig_Vernter_Institute_Rockville_Maryland.jpg" ;
nmdc:url "https://upload.wikimedia.org/wikipedia/commons/8/86/J._Craig_Vernter_Institute_Rockville_Maryland.jpg" ;
nmdc:was_generated_by nmdc:any_string_1 ],
[ a nmdc:ImageValue ;
dcterms:description "Photo of Craig Venter Institute, La Jolla, California" ;
nmdc:display_order "2" ;
nmdc:has_raw_value "https://today.ucsd.edu/news_uploads/140213ventor2.jpg" ;
nmdc:url "https://today.ucsd.edu/news_uploads/140213ventor2.jpg" ;
nmdc:was_generated_by nmdc:any_string_1 ],
[ a nmdc:ImageValue ;
dcterms:description "Photo of Craig Venter Institute, Rockville, Maryland" ;
nmdc:display_order "1" ;
nmdc:has_raw_value "https://upload.wikimedia.org/wikipedia/commons/8/86/J._Craig_Vernter_Institute_Rockville_Maryland.jpg" ;
nmdc:url "https://upload.wikimedia.org/wikipedia/commons/8/86/J._Craig_Vernter_Institute_Rockville_Maryland.jpg" ;
nmdc:was_generated_by nmdc:any_string_1 ] ;
nmdc:title "Sample Exhaustive Biosample instance. Although all of these values should pass validation, that does not mean that any Biosample of any type would necessarily have this particular combination of values." ;
nmdc:type "any string" ;
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