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aclum committed Oct 21, 2024
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10 changes: 5 additions & 5 deletions pr-preview/pr-2229/add_date/index.html
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Expand Up @@ -497,6 +497,11 @@ <h2 id="applicable-classes">Applicable Classes</h2>
</thead>
<tbody>
<tr>
<td><a href="../NucleotideSequencing/">NucleotideSequencing</a></td>
<td>A DataGeneration in which the sequence of DNA or RNA molecules is generated</td>
<td>no</td>
</tr>
<tr>
<td><a href="../MassSpectrometry/">MassSpectrometry</a></td>
<td>Spectrometry where the sample is converted into gaseous ions which are charac...</td>
<td>no</td>
Expand All @@ -511,11 +516,6 @@ <h2 id="applicable-classes">Applicable Classes</h2>
<td>The methods and processes used to generate omics data from a biosample or org...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../NucleotideSequencing/">NucleotideSequencing</a></td>
<td>A DataGeneration in which the sequence of DNA or RNA molecules is generated</td>
<td>no</td>
</tr>
</tbody>
</table>
<h2 id="properties">Properties</h2>
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198 changes: 99 additions & 99 deletions pr-preview/pr-2229/alternative_identifiers/index.html
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Expand Up @@ -511,28 +511,23 @@ <h2 id="applicable-classes">Applicable Classes</h2>
</thead>
<tbody>
<tr>
<td><a href="../MassSpectrometryConfiguration/">MassSpectrometryConfiguration</a></td>
<td>A set of parameters that define and control the actions of a mass spectrometr...</td>
<td><a href="../DataGeneration/">DataGeneration</a></td>
<td>The methods and processes used to generate omics data from a biosample or org...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../MixingProcess/">MixingProcess</a></td>
<td>The combining of components, particles or layers into a more homogeneous stat...</td>
<td><a href="../EnvironmentalMaterialTerm/">EnvironmentalMaterialTerm</a></td>
<td></td>
<td>no</td>
</tr>
<tr>
<td><a href="../Biosample/">Biosample</a></td>
<td>Biological source material which can be characterized by an experiment</td>
<td>yes</td>
</tr>
<tr>
<td><a href="../ChromatographicSeparationProcess/">ChromatographicSeparationProcess</a></td>
<td>The process of using a selective partitioning of the analyte or interferent b...</td>
<td><a href="../SubSamplingProcess/">SubSamplingProcess</a></td>
<td>Separating a sample aliquot from the starting material for downstream activit...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../ChemicalConversionProcess/">ChemicalConversionProcess</a></td>
<td>A process that results in the interconversion of chemical species by a reacti...</td>
<td><a href="../MetagenomeAssembly/">MetagenomeAssembly</a></td>
<td>A workflow execution activity that converts sequencing reads into an assemble...</td>
<td>no</td>
</tr>
<tr>
Expand All @@ -541,93 +536,93 @@ <h2 id="applicable-classes">Applicable Classes</h2>
<td>no</td>
</tr>
<tr>
<td><a href="../CollectingBiosamplesFromSite/">CollectingBiosamplesFromSite</a></td>
<td></td>
<td><a href="../FiltrationProcess/">FiltrationProcess</a></td>
<td>The process of segregation of phases; e</td>
<td>no</td>
</tr>
<tr>
<td><a href="../MetagenomeAssembly/">MetagenomeAssembly</a></td>
<td>A workflow execution activity that converts sequencing reads into an assemble...</td>
<td><a href="../ChromatographyConfiguration/">ChromatographyConfiguration</a></td>
<td>A set of parameters that define and control the actions of a chromatography p...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../NomAnalysis/">NomAnalysis</a></td>
<td></td>
<td><a href="../MassSpectrometry/">MassSpectrometry</a></td>
<td>Spectrometry where the sample is converted into gaseous ions which are charac...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../MetabolomicsAnalysis/">MetabolomicsAnalysis</a></td>
<td><a href="../LibraryPreparation/">LibraryPreparation</a></td>
<td></td>
<td>no</td>
</tr>
<tr>
<td><a href="../MassSpectrometry/">MassSpectrometry</a></td>
<td>Spectrometry where the sample is converted into gaseous ions which are charac...</td>
<td><a href="../OrthologyGroup/">OrthologyGroup</a></td>
<td>A set of genes or gene products in which all members are orthologous</td>
<td>no</td>
</tr>
<tr>
<td><a href="../PlannedProcess/">PlannedProcess</a></td>
<td><a href="../Site/">Site</a></td>
<td></td>
<td>no</td>
</tr>
<tr>
<td><a href="../LibraryPreparation/">LibraryPreparation</a></td>
<td></td>
<td><a href="../MetagenomeSequencing/">MetagenomeSequencing</a></td>
<td>Initial sequencing activity that precedes any analysis</td>
<td>no</td>
</tr>
<tr>
<td><a href="../GeneProduct/">GeneProduct</a></td>
<td>A molecule encoded by a gene that has an evolved function</td>
<td><a href="../CollectingBiosamplesFromSite/">CollectingBiosamplesFromSite</a></td>
<td></td>
<td>no</td>
</tr>
<tr>
<td><a href="../Pooling/">Pooling</a></td>
<td>physical combination of several instances of like material</td>
<td><a href="../CalibrationInformation/">CalibrationInformation</a></td>
<td>A calibration object that is associated with a process</td>
<td>no</td>
</tr>
<tr>
<td><a href="../ChromatographyConfiguration/">ChromatographyConfiguration</a></td>
<td>A set of parameters that define and control the actions of a chromatography p...</td>
<td><a href="../ProtocolExecution/">ProtocolExecution</a></td>
<td>A PlannedProces that has PlannedProcess parts</td>
<td>no</td>
</tr>
<tr>
<td><a href="../FunctionalAnnotationTerm/">FunctionalAnnotationTerm</a></td>
<td>Abstract grouping class for any term/descriptor that can be applied to a func...</td>
<td><a href="../ChemicalConversionProcess/">ChemicalConversionProcess</a></td>
<td>A process that results in the interconversion of chemical species by a reacti...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../MetagenomeAnnotation/">MetagenomeAnnotation</a></td>
<td>A workflow execution activity that provides functional and structural annotat...</td>
<td>no</td>
<td><a href="../Study/">Study</a></td>
<td>A study summarizes the overall goal of a research initiative and outlines the...</td>
<td>yes</td>
</tr>
<tr>
<td><a href="../MaterialProcessing/">MaterialProcessing</a></td>
<td>A process that takes one or more samples as inputs and generates one or more ...</td>
<td><a href="../FunctionalAnnotationTerm/">FunctionalAnnotationTerm</a></td>
<td>Abstract grouping class for any term/descriptor that can be applied to a func...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../CalibrationInformation/">CalibrationInformation</a></td>
<td>A calibration object that is associated with a process</td>
<td><a href="../MassSpectrometryConfiguration/">MassSpectrometryConfiguration</a></td>
<td>A set of parameters that define and control the actions of a mass spectrometr...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../InformationObject/">InformationObject</a></td>
<td>Any data or knowledge that reduces uncertainty or enhances understanding abou...</td>
<td><a href="../ReadBasedTaxonomyAnalysis/">ReadBasedTaxonomyAnalysis</a></td>
<td>A workflow execution activity that performs taxonomy classification using seq...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../OntologyClass/">OntologyClass</a></td>
<td></td>
<td><a href="../ChromatographicSeparationProcess/">ChromatographicSeparationProcess</a></td>
<td>The process of using a selective partitioning of the analyte or interferent b...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../ProcessedSample/">ProcessedSample</a></td>
<td></td>
<td><a href="../Pooling/">Pooling</a></td>
<td>physical combination of several instances of like material</td>
<td>no</td>
</tr>
<tr>
<td><a href="../MetagenomeSequencing/">MetagenomeSequencing</a></td>
<td>Initial sequencing activity that precedes any analysis</td>
<td><a href="../Extraction/">Extraction</a></td>
<td>A material separation in which a desired component of an input material is se...</td>
<td>no</td>
</tr>
<tr>
Expand All @@ -636,133 +631,138 @@ <h2 id="applicable-classes">Applicable Classes</h2>
<td>no</td>
</tr>
<tr>
<td><a href="../MetatranscriptomeAssembly/">MetatranscriptomeAssembly</a></td>
<td></td>
<td><a href="../MaterialProcessing/">MaterialProcessing</a></td>
<td>A process that takes one or more samples as inputs and generates one or more ...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../SubSamplingProcess/">SubSamplingProcess</a></td>
<td>Separating a sample aliquot from the starting material for downstream activit...</td>
<td><a href="../MetabolomicsAnalysis/">MetabolomicsAnalysis</a></td>
<td></td>
<td>no</td>
</tr>
<tr>
<td><a href="../StorageProcess/">StorageProcess</a></td>
<td>A planned process with the objective to preserve and protect material entitie...</td>
<td><a href="../MetaboliteIdentification/">MetaboliteIdentification</a></td>
<td>This is used to link a metabolomics analysis workflow to a specific metabolit...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../Site/">Site</a></td>
<td><a href="../OntologyClass/">OntologyClass</a></td>
<td></td>
<td>no</td>
</tr>
<tr>
<td><a href="../MetaproteomicsAnalysis/">MetaproteomicsAnalysis</a></td>
<td><a href="../MetatranscriptomeAssembly/">MetatranscriptomeAssembly</a></td>
<td></td>
<td>no</td>
</tr>
<tr>
<td><a href="../ProtocolExecution/">ProtocolExecution</a></td>
<td>A PlannedProces that has PlannedProcess parts</td>
<td><a href="../PlannedProcess/">PlannedProcess</a></td>
<td></td>
<td>no</td>
</tr>
<tr>
<td><a href="../MetatranscriptomeAnnotation/">MetatranscriptomeAnnotation</a></td>
<td></td>
<td><a href="../WorkflowExecution/">WorkflowExecution</a></td>
<td>Represents an instance of an execution of a particular workflow</td>
<td>no</td>
</tr>
<tr>
<td><a href="../MetaboliteIdentification/">MetaboliteIdentification</a></td>
<td>This is used to link a metabolomics analysis workflow to a specific metabolit...</td>
<td><a href="../DissolvingProcess/">DissolvingProcess</a></td>
<td>A mixing step where a soluble component is mixed with a liquid component</td>
<td>no</td>
</tr>
<tr>
<td><a href="../ReadQcAnalysis/">ReadQcAnalysis</a></td>
<td>A workflow execution activity that performs quality control on raw Illumina r...</td>
<td><a href="../StorageProcess/">StorageProcess</a></td>
<td>A planned process with the objective to preserve and protect material entitie...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../DataGeneration/">DataGeneration</a></td>
<td>The methods and processes used to generate omics data from a biosample or org...</td>
<td><a href="../NamedThing/">NamedThing</a></td>
<td>a databased entity or concept/class</td>
<td>no</td>
</tr>
<tr>
<td><a href="../FieldResearchSite/">FieldResearchSite</a></td>
<td>A site, outside of a laboratory, from which biosamples may be collected</td>
<td><a href="../MetatranscriptomeAnnotation/">MetatranscriptomeAnnotation</a></td>
<td></td>
<td>no</td>
</tr>
<tr>
<td><a href="../DataObject/">DataObject</a></td>
<td>An object that primarily consists of symbols that represent information</td>
<td><a href="../Biosample/">Biosample</a></td>
<td>Biological source material which can be characterized by an experiment</td>
<td>yes</td>
</tr>
<tr>
<td><a href="../Configuration/">Configuration</a></td>
<td>A set of parameters that define the actions of a process and is shared among ...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../OrthologyGroup/">OrthologyGroup</a></td>
<td>A set of genes or gene products in which all members are orthologous</td>
<td><a href="../ReadQcAnalysis/">ReadQcAnalysis</a></td>
<td>A workflow execution activity that performs quality control on raw Illumina r...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../Extraction/">Extraction</a></td>
<td>A material separation in which a desired component of an input material is se...</td>
<td><a href="../MetaproteomicsAnalysis/">MetaproteomicsAnalysis</a></td>
<td></td>
<td>no</td>
</tr>
<tr>
<td><a href="../ReadBasedTaxonomyAnalysis/">ReadBasedTaxonomyAnalysis</a></td>
<td>A workflow execution activity that performs taxonomy classification using seq...</td>
<td><a href="../Pathway/">Pathway</a></td>
<td>A pathway is a sequence of steps/reactions carried out by an organism or comm...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../WorkflowExecution/">WorkflowExecution</a></td>
<td>Represents an instance of an execution of a particular workflow</td>
<td><a href="../Instrument/">Instrument</a></td>
<td>A material entity that is designed to perform a function in a scientific inve...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../MagsAnalysis/">MagsAnalysis</a></td>
<td>A workflow execution activity that uses computational binning tools to group ...</td>
<td><a href="../NomAnalysis/">NomAnalysis</a></td>
<td></td>
<td>no</td>
</tr>
<tr>
<td><a href="../Instrument/">Instrument</a></td>
<td>A material entity that is designed to perform a function in a scientific inve...</td>
<td><a href="../DataObject/">DataObject</a></td>
<td>An object that primarily consists of symbols that represent information</td>
<td>no</td>
</tr>
<tr>
<td><a href="../NamedThing/">NamedThing</a></td>
<td>a databased entity or concept/class</td>
<td><a href="../GeneProduct/">GeneProduct</a></td>
<td>A molecule encoded by a gene that has an evolved function</td>
<td>no</td>
</tr>
<tr>
<td><a href="../EnvironmentalMaterialTerm/">EnvironmentalMaterialTerm</a></td>
<td></td>
<td><a href="../ChemicalEntity/">ChemicalEntity</a></td>
<td>An atom or molecule that can be represented with a chemical formula</td>
<td>no</td>
</tr>
<tr>
<td><a href="../FiltrationProcess/">FiltrationProcess</a></td>
<td>The process of segregation of phases; e</td>
<td><a href="../MetagenomeAnnotation/">MetagenomeAnnotation</a></td>
<td>A workflow execution activity that provides functional and structural annotat...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../DissolvingProcess/">DissolvingProcess</a></td>
<td>A mixing step where a soluble component is mixed with a liquid component</td>
<td><a href="../MixingProcess/">MixingProcess</a></td>
<td>The combining of components, particles or layers into a more homogeneous stat...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../Configuration/">Configuration</a></td>
<td>A set of parameters that define the actions of a process and is shared among ...</td>
<td><a href="../FieldResearchSite/">FieldResearchSite</a></td>
<td>A site, outside of a laboratory, from which biosamples may be collected</td>
<td>no</td>
</tr>
<tr>
<td><a href="../ChemicalEntity/">ChemicalEntity</a></td>
<td>An atom or molecule that can be represented with a chemical formula</td>
<td><a href="../ProcessedSample/">ProcessedSample</a></td>
<td></td>
<td>no</td>
</tr>
<tr>
<td><a href="../Study/">Study</a></td>
<td>A study summarizes the overall goal of a research initiative and outlines the...</td>
<td>yes</td>
<td><a href="../InformationObject/">InformationObject</a></td>
<td>Any data or knowledge that reduces uncertainty or enhances understanding abou...</td>
<td>no</td>
</tr>
<tr>
<td><a href="../Pathway/">Pathway</a></td>
<td>A pathway is a sequence of steps/reactions carried out by an organism or comm...</td>
<td><a href="../MagsAnalysis/">MagsAnalysis</a></td>
<td>A workflow execution activity that uses computational binning tools to group ...</td>
<td>no</td>
</tr>
<tr>
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