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Add genomad files to FileTypeEnum #2228

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Oct 21, 2024
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23 changes: 23 additions & 0 deletions src/schema/basic_slots.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -607,6 +607,29 @@ enums:
FileTypeEnum:
permissible_values:

Virus Summary:
description: Tab separated file listing the viruses found by geNomad.
see_also:
- https://portal.nersc.gov/genomad/
annotations:
file_name_pattern: '^_virus_summary\.tsv?$'

Plasmid Summary:
description: Tab separated file listing the plasmids found be geNomad.
see_also:
- https://portal.nersc.gov/genomad/
annotations:
file_name_pattern: '^_plasmid_summary\.tsv?$'

GeNomad Aggregated Classification:
description: >-
Tab separated file which combines the results from neural network-based classification
and marker-based classification for virus and plasmid detection with geNomad.
see_also:
- https://portal.nersc.gov/genomad/
annotations:
file_name_pattern: '^_aggregated_classification\.tsv?$'

Reference Calibration File:
description: A file that contains data used to calibrate a natural organic matter or metabalomics analysis.

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