Releases: microbiomedata/nmdc-schema
Releases · microbiomedata/nmdc-schema
v7.7.3
What's Changed
- clarify Study description to not include links by @brynnz22 in #1050
- update funding_sources to be more specific by @brynnz22 in #1058
- update elev comments for Biosample slot usage by @brynnz22 in #1072
- remove abstract slot globally from schema by @brynnz22 in #1055
Full Changelog: v7.7.2...v7.7.3
Contributors
brynnz22
Assets 2
v7.7.2
What's Changed
- add benthic mappings and minor edits by @brynnz22 in #1012
- edit neon mapping tsv units and add nmdc unit column by @brynnz22 in #1022
- update nucleicAcidConcentration and purity mappings by @brynnz22 in #1023
- repaired the fully-repaired file paths by @turbomam in #1025
- update neon raw data file mappings tsv by @sujaypatil96 in #1038
- Update nmdc.yaml by @aclum in #1044
- added jgi_portal_study_identifiers slot and example data by @turbomam in #1043
- delete old mapping neon_nmdc_term_mappings.tsv file by @brynnz22 in #1020
- remove rawDataFiles table for soil, benthic, and surfacewater mappings by @brynnz22 in #1024
Full Changelog: v7.7.1...v7.7.2
Contributors
aclum, sujaypatil96, and 2 other contributors
Assets 2
v7.7.1
What's Changed
- Create neon_Biosample_to_DataObject_NEON.yaml by @aclum in #1011
- Neon biosample to dataobjects valid data by @turbomam in #1013
- Update MAINTAINERS.md by @turbomam in #1010
- Update README.md by @turbomam in #1009
- linkml 1.5.6 by @turbomam in #1015
- dump-validate-report-mongodb by @turbomam in #1017
- explicit fully repaired target by @turbomam in #1018
Full Changelog: v7.7.0...v7.7.1
Contributors
aclum and turbomam
Assets 2
v7.7.0
What's Changed
- Corrections to NEON NMDC mappings TSV file by @sujaypatil96 in #1003
- legacy id tolerant shadow schema (
make -f project.Makefile accepting_legacy_ids_all) by @turbomam in #1005 - more modular MongoDB dumper/fixer (nmdc_schema/mongodb_direct_to_nmdc_Database_file.py , invoked by
make -f project.Makefile dump-validate-report-convert-mongodb) by @turbomam in #1005
Full Changelog: v7.6.7...v7.7.0
Contributors
sujaypatil96 and turbomam
Assets 2
v7.6.7
What GH considered v7.6.6 still had mentions of v7.6.5 in some files. Here we are updating those files to mention v7.6.7 and making a new GH release to trigger a new PyPI release.
Full Changelog: v7.6.6...v7.6.7
v7.6.6
What's Changed
- gen prefix maps by @turbomam in #988
- Rename biosample_category_enum to follow naming standards by @Shalsh23 in #993
- Remove dashes from module name by @sujaypatil96 in #991
- revert id struct pats after merging into main by @turbomam in #994
- regen after backmerge of main and commenting out the
structured_prefixesofids by @turbomam in #995
New Contributors
Full Changelog: v7.6.5...v7.6.6
Contributors
Shalsh23, sujaypatil96, and turbomam
Assets 2
v7.6.5
v7.6.2
v7.6.1
What's Changed
- with sparql value counting by @turbomam in #959
- emsl identifier hierarchy by @turbomam in #962
- plus some schema diet by @turbomam in #964
- new prefixes by @turbomam in #965
- add neon mappings tsv by @brynnz22 in #968
- import and prefix cleanup etc. by @turbomam in #967
- Update nmdc.yaml by @aclum in #971
- img_identifiers pattern and range: external identifier, which inherits type uriorcurie by @turbomam in #969
- bulk dl readme by @turbomam in #970
- emsl ids supplement by @turbomam in #974
- Create "NIST Bioeconomy Lexicon Scraper" notebook by @eecavanna in #973
- emsl_project_dois slot by @turbomam in #975
- who has DNA concentration and absorbance? by @turbomam in #976
- Biosamples are only part of Studies by @turbomam in #977
New Contributors
- @brynnz22 made their first contribution in #968
- @eecavanna made their first contribution in #973
Full Changelog: v7.6.0...v7.6.1
Contributors
aclum, turbomam, and 2 other contributors
Assets 2
v7.6.0
What's Changed
- sample_link string range by @turbomam in #832
- ended at time example data by @turbomam in #835
- YesNoEnum for dnase slots by @turbomam in #841
- more enum consolidation by @turbomam in #842
- Use NMDC's mixs for now by @turbomam in #848
- latest poetry.lock by @turbomam in #851
- fix id minter endpoint link in identifiers doc by @sujaypatil96 in #856
- regenerated with linkml 1.4 by @turbomam in #872
- linkml
v1.5.1has class doc pages fix by @sujaypatil96 in #867 - Use Makefile targets instead of individual poetry commands by @sujaypatil96 in #876
- Add
required: trueto latitude and longitude on GeolocationValue by @sujaypatil96 in #860 - updated tube/plate/well rules and example data by @turbomam in #889
- #890 rna cont id string ser = {text < 20 characters} by @turbomam in #891
- add M horizon to soil_horizon_enum and include example data by @turbomam in #892
- GNPS identifier modeling and example by @turbomam in #894
- replacement content for cur_land_use_enum by @turbomam in #897
- Force taxonomy id slots to be CURIEs by @sujaypatil96 in #864
- Missing nmdc yaml by @turbomam in #902
- min and max for rna_volume by @turbomam in #904
- neon story by @turbomam in #921
- moved problematic examples to src/data/unexpected-pass by @turbomam in #920
- Pooling modeling with generateds by @turbomam in #888
- neon story expanding by @turbomam in #922
- Issue 917 neon story by @turbomam in #926
- Seq enum updates by @aclum in #929
- oxy_stat_samp not rel_to_oxygen by @turbomam in #934
- 20220601 seq file enums by @aclum in #933
- poetry lock update by @turbomam in #935
- ready to generate by @turbomam in #911
- inc unrelated wide_two_keys by @turbomam in #905
- mongo dumps etc by @turbomam in #918
- MongoDB to NMDC Database dumper by @turbomam in #939
- Stragglers 20230505 by @turbomam in #941
- new identifier mixins and cleanup by @turbomam in #944
- start and end dates created and assigned by @turbomam in #945
- singular has_input/output by @turbomam in #946
- notebook checks for populated fields in MongoDB documents by @turbomam in #949
- oaklib for neon environment parsing by @turbomam in #950
- id patterns for new classes by @turbomam in #951
- include envo.db by @turbomam in #952
- move several slots up to PlannedProcess by @turbomam in #954
- Update nmdc.yaml by @aclum in #958
New Contributors
Full Changelog: v7.5.0...v7.6.0
Contributors
aclum, sujaypatil96, and turbomam