Create migration for new gene function tables

nmdc_server/migrations/versions/d89192564855_add_cog_pfam_term_tables.py

@@ -0,0 +1,45 @@
+"""Add tables to store COG and PFAM terms
+
+Separate these from the existing KEGG terms to allow
+for more specific searches.
+
+Revision ID: d89192564855
+Revises: 5fb9910ca8e6
+Create Date: 2024-10-09 20:08:45.656007
+
+"""
+
+from typing import Optional
+
+import sqlalchemy as sa
+from alembic import op
+
+# revision identifiers, used by Alembic.
+revision: str = "d89192564855"
+down_revision: Optional[str] = "5fb9910ca8e6"
+branch_labels: Optional[str] = None
+depends_on: Optional[str] = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.create_table(
+        "cog_term_text",
+        sa.Column("term", sa.String(), nullable=False),
+        sa.Column("text", sa.Text(), nullable=False),
+        sa.PrimaryKeyConstraint("term", name=op.f("pk_cog_term_text")),
+    )
+    op.create_table(
+        "pfam_term_text",
+        sa.Column("term", sa.String(), nullable=False),
+        sa.Column("text", sa.Text(), nullable=False),
+        sa.PrimaryKeyConstraint("term", name=op.f("pk_pfam_term_text")),
+    )
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_table("pfam_term_text")
+    op.drop_table("cog_term_text")
+    # ### end Alembic commands ###