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39 Open 29 Closed
39 Open 29 Closed
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Issues list

GOLD study ingest improvement- convert contacts to has credit associations
#123 opened Mar 29, 2023 by aclum
@aclum
neon sample metadata retrieval
#120 opened Mar 17, 2023 by turbomam
@turbomam
retrieve NCBI biosample metadata with a GOLD study ID as the input
#116 opened Feb 27, 2023 by turbomam
@turbomam
SSSOM mapping file between GOLD fields and NMDC slots
#114 opened Jan 10, 2023 by sujaypatil96
@sujaypatil96
allow GOLD NMDC pipeline to filter based on biosample IDs backlog
#112 opened Sep 12, 2022 by sujaypatil96
@sujaypatil96
4
Improve logging: why don't some studies or biosamples get instantiated?
#110 opened Aug 8, 2022 by turbomam
@turbomam
2
Should portal submitter be included in Study instances?
#109 opened Aug 8, 2022 by turbomam
@turbomam @mslarae13
3
Better documentation for credentials required by api_or_tsv_metadata_submissions_to_json.py
#108 opened Aug 8, 2022 by turbomam
@turbomam
Deep parse when converting anything into NMDC Biosamples and Studies (at least)
#107 opened Aug 8, 2022 by turbomam
single codebase for converting from any source to NMDC biosamples or studies
#106 opened Aug 8, 2022 by turbomam
@sujaypatil96 @turbomam @pkalita-lbl
Sustainable integration of nmdc-runtime components?
#105 opened Aug 8, 2022 by turbomam
@turbomam
1
Web form that accepts dataset
#101 opened Jul 7, 2022 by sujaypatil96
@sujaypatil96 @pkalita-lbl
3
GROW dataset import into NMDC mongo backlog
#99 opened Jul 7, 2022 by sujaypatil96
@sujaypatil96
4
submissions_as_studies.py should keep track of whether the data came from dev or prod
#98 opened Jun 16, 2022 by turbomam
@turbomam
submissions_as_studies.py generates some empty strings in assets/out/submissions_as_studies.yaml
#97 opened Jun 16, 2022 by turbomam
@turbomam
1
Add credit association processing to submissions_as_studies.py
#96 opened Jun 16, 2022 by turbomam
@sujaypatil96 @turbomam
1
submissions_as_studies.py need click CLI
#95 opened Jun 16, 2022 by turbomam
@turbomam
1
Inconsistency between data in GOLD and data from bioregistry bug Something isn't working
#93 opened Jun 7, 2022 by sujaypatil96
Get metadata submissions from the NMDC API & make schema compliant backlog
#90 opened May 20, 2022 by turbomam Sprint 18
@turbomam
6
find NMDC biosamples that are also present in the BBOP INSDC SQLite database
#87 opened May 9, 2022 by turbomam
@turbomam
1
batch write quantity value reapirs to SQLite
#83 opened May 4, 2022 by turbomam
@turbomam
2
issue-79-Generalizable-Cleaning-Scripts
#79 opened Apr 30, 2022 by aarleed
1
Inconsistent env_broad_scale column
#77 opened Apr 28, 2022 by jeaniceangelica
4
Removal of unnecessary folders maintenance setuptools, poetry, actions etc. related modifications
#71 opened Apr 21, 2022 by sujaypatil96
@turbomam
1
FAO soil group to OBO term mapping by @turbomam and DataGood? (microbiomedata/nmdc-schema #113)
#64 opened Mar 14, 2022 by turbomam
@turbomam
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