0.2.15

What's Changed

• Fixing Non-ASCII character error by using avg read qual instead of the default value @karthigayini in #51
• Added option -het to include heterozygous sites in the calculation of discordant rate.

New Contributors

• @karthigayini made their first contribution in #51

Full Changelog: 0.2.14...0.2.15

0.2.14

Updates for ch workflow:
✔️ Changing delimiter in predicted_sample_group column. This was causing issues when Multiqc parsed collapsed_genotype_clusters_input.csv in the ch qc workflow.
✔️ updating pysam version, changing from pyvcf to pyvcf3

v0.2.13

• Fixes #46

PR: #47

v0.2.12

• Print NA for predicted sex if a bed file was provided which contains no Y chromosome regions
• Fix issue where extraction file may not end in .pickle
• fix unit tests and add a unit test for sex mismatch

v0.2.11

• Output predicted patient (#24)
• Use .pickle instead of .pk (#40)
• Automatically remove non Y chromosome regions.

v0.2.10

• multi-threading was accidentally disabled for the extract tool (#42 )

v0.2.9

• bug when plotting minor contamination contributing sites (#39 )

v0.2.8

• hotfix for dealing with non-ascii in duplex bams produced by fgbio (#38)

v0.2.7

• if genotype tool only has one input sample, don't exit with error

v0.2.6

• genotype tool would fail when providing CSV input (#36)