Skip to content

added coordinates to fusion transcript result file #7

added coordinates to fusion transcript result file

added coordinates to fusion transcript result file #7

Workflow file for this run

name: Tests
on:
push:
branches:
- "**"
jobs:
build:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.7", "3.8", "3.9", "3.10"]
steps:
- name: Checkout source code
uses: actions/checkout@v3
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install pytest
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
pip install .
cd test
../bin/agfusion download -g hg19
../bin/agfusion download -g hg38
../bin/agfusion download -s mus_musculus -r 84
pyensembl install --release 84 --species mus_musculus
pyensembl install --release 75 --species homo_sapiens
pyensembl install --release 95 --species homo_sapiens
- name: Test with pytest
run: |
cd test
pytest
- name: Test build bundle for pip
run: |
pip install setuptools wheel build
python setup.py sdist bdist_wheel