Added new cff_transcript parser directly querying transcript ids #10
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name: Tests | |
on: | |
push: | |
branches: | |
- "**" | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ["3.7", "3.8", "3.9", "3.10"] | |
steps: | |
- name: Checkout source code | |
uses: actions/checkout@v3 | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install pytest | |
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
pip install . | |
cd test | |
../bin/agfusion download -g hg19 | |
../bin/agfusion download -g hg38 | |
../bin/agfusion download -s mus_musculus -r 84 | |
pyensembl install --release 84 --species mus_musculus | |
pyensembl install --release 75 --species homo_sapiens | |
pyensembl install --release 95 --species homo_sapiens | |
- name: Test with pytest | |
run: | | |
cd test | |
pytest | |
- name: Test build bundle for pip | |
run: | | |
pip install setuptools wheel build | |
python setup.py sdist bdist_wheel |