removed unnecessary lines #12
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| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - "**" | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10"] | |
| steps: | |
| - name: Checkout source code | |
| uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pytest | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| pip install . | |
| cd test | |
| ../bin/agfusion download -g hg19 | |
| ../bin/agfusion download -g hg38 | |
| ../bin/agfusion download -s mus_musculus -r 84 | |
| pyensembl install --release 84 --species mus_musculus | |
| pyensembl install --release 75 --species homo_sapiens | |
| pyensembl install --release 95 --species homo_sapiens | |
| - name: Test with pytest | |
| run: | | |
| cd test | |
| pytest | |
| - name: Test build bundle for pip | |
| run: | | |
| pip install setuptools wheel build | |
| python setup.py sdist bdist_wheel |