Update run_param_config.py

update for genome for MIssionBio-Heme to run large samples on DRAGEN
mskcc · Apr 29, 2024 · 2c0ff81 · 2c0ff81
1 parent a7d2eb4
commit 2c0ff81
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/scripts/run_param_config.py b/scripts/run_param_config.py
@@ -97,7 +97,7 @@ def get_ordered_dic(unordered_dic):
 				"RDM": "hg19",
 				"myTYPE_V1": "hg19",
 				"PanCancerV2": "hg19",
-				"MissionBio-Heme": "hg19",
+				"MissionBio-Heme": "GRCh38",
 				"WholeExome_v4": "hg19",
 				"AmpliSeq": "hg19",
 				"HemeBrainPACT_v1": "hg19"
@@ -575,8 +575,8 @@ def get_ordered_dic(unordered_dic):
 				MD: "yes"
 		},
 		"MissionBio-Heme": {
-				BAITS: "/igo/home/igo/resources/ilist/MissionBio-Heme/AML_BAITS.iList",
-				TARGETS: "/igo/home/igo/resources/ilist/MissionBio-Heme/AML_BAITS.iList",
+				BAITS: "/igo/work/nabors/bed_files/Mission_Bio/hg38/MissionBio-Heme_BAITS.iList",
+				TARGETS: "/igo/work/nabors/bed_files/Mission_Bio/hg38/MissionBio-Heme_TARGETS.iList",
 				MSKQ: "no",
 				MD: "yes"
 		},