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Update LaunchMetrics.py
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need the continue statement to get out of the loop
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darrelln32 committed Mar 25, 2024
1 parent f1b3e25 commit b0a60f1
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1 change: 1 addition & 0 deletions scripts/LaunchMetrics.py
Original file line number Diff line number Diff line change
Expand Up @@ -69,6 +69,7 @@ def launch_metrics(self, all_samples, run, project_directory):
demux_report_file = "/igo/staging/FASTQ/{}/Reports/Demultiplex_Stats.csv".format(run)
demux_reads_per_sample = scripts.get_total_reads_from_demux.get_total_reads([sample.sample_id], demux_report_file)
scripts.get_total_reads_from_demux.write_to_am_txt(run, sample.sample_id, demux_reads_per_sample[sample.sample_id], stats_done_directory)
continue

# grab the sample parameters (bait set, type, gtag, etc)
sample_parameters = self.get_parameters(sample.genome, sample.recipe)
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