update test code according to new recipe

mskcc · May 20, 2024 · e9bb520 · e9bb520
1 parent 3daa6d0
commit e9bb520
Show file tree

Hide file tree

Showing 2 changed files with 20 additions and 20 deletions.
diff --git a/test/SampleSheet_DLP.csv b/test/SampleSheet_DLP.csv
@@ -1,20 +1,20 @@
-[Header],,,,,,,,
-IEMFileVersion,4,,,,,,,
-Date,11/30/2021,,,,,,,
-Workflow,GenerateFASTQ,,,,,,,
-Application,MICHELLE,,,,,,,
-Assay,,,,,,,,
-Description,,,,,,,,
-Chemistry,Default,,,,,,,
-,,,,,,,,
-[Reads],,,,,,,,
-151,,,,,,,,
-151,,,,,,,,
-,,,,,,,,
-[Settings],,,,,,,,
-BarcodeMismatchesIndex1,0,,,,,,,
-BarcodeMismatchesIndex2,0,,,,,,,
-[Data],,,,,,,,
-Lane,Sample_ID,Sample_Plate,Sample_Well,I7_Index_ID,index,index2,Sample_Project,Description
-1,DLPNegativeCONTROL_12345A_3_3_IGO_DLPNegativeCONTROL-2710,Mouse,DLP,DLPi7_03-i5_03,AAGGACAT,AACCCCGT,Project_12345,someone@mskcc.org
+[Header],,,,,,,,
+IEMFileVersion,4,,,,,,,
+Date,11/30/21,,,,,,,
+Workflow,GenerateFASTQ,,,,,,,
+Application,MICHELLE,,,,,,,
+Assay,,,,,,,,
+Description,,,,,,,,
+Chemistry,Default,,,,,,,
+,,,,,,,,
+[Reads],,,,,,,,
+151,,,,,,,,
+151,,,,,,,,
+,,,,,,,,
+[Settings],,,,,,,,
+BarcodeMismatchesIndex1,0,,,,,,,
+BarcodeMismatchesIndex2,0,,,,,,,
+[Data],,,,,,,,
+Lane,Sample_ID,Sample_Plate,Sample_Well,I7_Index_ID,index,index2,Sample_Project,Description
+1,DLPNegativeCONTROL_12345A_3_3_IGO_DLPNegativeCONTROL-2710,Mouse,SC_DLP,DLPi7_03-i5_03,AAGGACAT,AACCCCGT,Project_12345,someone@mskcc.org
 1,IM-1613_RU1697a_IGO_12437_AD_11,Mouse,10X_Genomics,SI-GA-G9,SI-GA-G9,SI-GA-G9,Project_12437_AD,peerd@mskcc.org
diff --git a/test_scripts.py b/test_scripts.py
@@ -30,7 +30,7 @@ def testCellranger_generate_cellranger_cmd():
 
 def testCellranger_get_tag():
     assert(cellranger.get_tag("10X_genomic") == "Skip")
-    assert(cellranger.get_tag("10X_Genomics_GeneExpression-3") == "count")
+    assert(cellranger.get_tag("SC_Chromium-GEX-3") == "count")
 
 def testCellranger_get_sequencer_runID():
     fastq_path = "/igo/staging/FASTQ/DIANA_0453_AHFKJ5DRXY/Project_06265_AG/Sample_06265_8869_1_IGO_06265_AG_3"