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Remove download pipeline test
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nikhil authored Jul 8, 2024
1 parent 9ab1677 commit 54cf55c
Showing 1 changed file with 9 additions and 11 deletions.
20 changes: 9 additions & 11 deletions .github/workflows/download_pipeline.yml
Original file line number Diff line number Diff line change
Expand Up @@ -11,14 +11,14 @@ on:
description: "The specific branch you wish to utilize for the test execution of nf-core download."
required: true
default: "dev"
pull_request:
types:
- opened
branches:
- master
pull_request_target:
branches:
- master
# pull_request:
# types:
# - opened
# branches:
# - master
# pull_request_target:
# branches:
# - master

env:
NXF_ANSI_LOG: false
Expand Down Expand Up @@ -53,7 +53,7 @@ jobs:
env:
NXF_SINGULARITY_CACHEDIR: ./
run: |
nf-core pipelines download ${{ env.REPO_LOWERCASE }} \
nf-core download ${{ env.REPO_LOWERCASE }} \
--revision ${{ env.REPO_BRANCH }} \
--outdir ./${{ env.REPOTITLE_LOWERCASE }} \
--compress "none" \
Expand All @@ -68,5 +68,3 @@ jobs:
- name: Run the downloaded pipeline
env:
NXF_SINGULARITY_CACHEDIR: ./
NXF_SINGULARITY_HOME_MOUNT: true
run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -stub -profile test,singularity --outdir ./results

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