Update neoantigeninput module

mskcc · Apr 10, 2024 · 57edfaf · 57edfaf
1 parent 57e0f65
commit 57edfaf
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/modules.json b/modules.json
@@ -17,7 +17,7 @@
                     },
                     "neoantigeninput": {
                         "branch": "neoantigen",
-                        "git_sha": "b12e5a8bfe7303d5b086fce25641a395e897ec6c",
+                        "git_sha": "3bd5f41f44ab3b8036090be6d0ce04034402199e",
                         "installed_by": ["modules"]
                     },
                     "netmhcpan": {

diff --git a/modules/msk/neoantigeninput/main.nf b/modules/msk/neoantigeninput/main.nf
@@ -27,7 +27,7 @@ process NEOANTIGENINPUT {
     """
         tree_folder_name=\$(basename -s .zip "${phyloWGSfolder}")
         mkdir \$tree_folder_name
-        unzip ${phyloWGSfolder}
+        unzip ${phyloWGSfolder} -d \$tree_folder_name
         gzip -d -c ${phyloWGSsumm} > ${id}.summ.json
         gzip -d -c ${phyloWGSmut} > ${id}.mut.json
 

diff --git a/modules/msk/neoantigeninput/tests/main.nf.test.snap b/modules/msk/neoantigeninput/tests/main.nf.test.snap
@@ -48,7 +48,7 @@
                 ]
             }
         ],
-        "timestamp": "2024-04-05T18:16:07.635268"
+        "timestamp": "2024-04-10T14:36:29.1748"
     },
     "neoantigeninput - json,tsv": {
         "content": [
@@ -99,6 +99,6 @@
                 ]
             }
         ],
-        "timestamp": "2024-04-05T18:15:58.939665"
+        "timestamp": "2024-04-10T14:36:22.508835"
     }
 }