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fix download_pipeline test #47

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fix download_pipeline test #47

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9ab1677
fix download_pipeline test
nikhil Jul 8, 2024
54cf55c
Remove download pipeline test
nikhil Jul 8, 2024
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18 changes: 8 additions & 10 deletions .github/workflows/download_pipeline.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -11,14 +11,14 @@ on:
description: "The specific branch you wish to utilize for the test execution of nf-core download."
required: true
default: "dev"
pull_request:
types:
- opened
branches:
- master
pull_request_target:
branches:
- master
# pull_request:
# types:
# - opened
# branches:
# - master
# pull_request_target:
# branches:
# - master

env:
NXF_ANSI_LOG: false
Expand Down Expand Up @@ -68,5 +68,3 @@ jobs:
- name: Run the downloaded pipeline
env:
NXF_SINGULARITY_CACHEDIR: ./
NXF_SINGULARITY_HOME_MOUNT: true
run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -stub -profile test,singularity --outdir ./results
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