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Fixing command
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mwang87 committed Oct 3, 2018
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Expand Up @@ -60,21 +60,21 @@ qiime metabolomics
This function will take as input a set of mass spectrometry files (mzXML or mzML) and a manifest file to produce a biom qza file by processing the data via MS2 spectral counts processing at GNPS.

```
qiime metabolomics import_gnpsnetworkingclustering
qiime metabolomics import-gnpsnetworkingclustering
```

#### MS2 GNPS Clustering Command
This function will take as input an existing GNPS Molecular Networking task and a manifest file to produce a biom qza file.

```
qiime metabolomics import_gnpsnetworkingclusteringtask
qiime metabolomics import-gnpsnetworkingclusteringtask
```

#### MZmine2 Feature Import Command
This function will take as input a feature quantification file from MZmine2 and a manifest file and produce a biom qza file.

```
qiime metabolomics import_mzmine2
qiime metabolomics import-mzmine2
```
## Example Data

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