WIP: Change substances config in impurities-core.conf to be in new style (based on previous work in the products module) #12

	name: "CodeQL-Advanced"

	on:
	push:
	branches: [ "starter" ]
	pull_request:
	branches: [ "starter" ]

	jobs:
	analyze:
	name: Analyze (${{ matrix.language }})
	runs-on:
	group: ncats-awsci-runners
	timeout-minutes: ${{ (matrix.language == 'swift' && 120) \|\| 360 }}
	permissions:
	# required for all workflows
	security-events: write

	# required to fetch internal or private CodeQL packs
	packages: read

	# only required for workflows in private repositories
	actions: read
	contents: read

	strategy:
	fail-fast: false
	matrix:
	include:
	- language: java-kotlin
	build-mode: none # This mode only analyzes Java. Set this to 'autobuild' or 'manual' to analyze Kotlin too.
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4

	# Initializes the CodeQL tools for scanning.
	- name: Initialize CodeQL
	uses: github/codeql-action/init@v3
	with:
	languages: ${{ matrix.language }}
	build-mode: ${{ matrix.build-mode }}
	- if: matrix.build-mode == 'manual'
	shell: bash
	run: \|
	echo 'If you are using a "manual" build mode for one or more of the' \
	'languages you are analyzing, replace this with the commands to build' \
	'your code, for example:'
	echo ' make bootstrap'
	echo ' make release'
	exit 1

	- name: Perform CodeQL Analysis
	uses: github/codeql-action/analyze@v3
	with:
	category: "/language:${{matrix.language}}"

	- name: Generate Security Report
	uses: rsdmike/github-security-report-action@v3.0.4
	with:
	token: ${{ secrets.GITHUB_TOKEN }}

	- name: Upload Artifacts
	uses: actions/upload-artifact@v4
	with:
	name: reports
	path: ./*.pdf

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