Proteomics Pipeline

This is a NIDAP application for performing global Mass Spectrometry analysis on cell lines. This is primarily used to understand the full expression of the cell lines and the underlying proteomics. Ultimately most of the MassSpect analysis itself is performed by a separate application called Thermofisher Proteome Discoverer, which at the moment only to NCATS members have licenses for. NIDAP in this case is used downstream of the MassSpect to perform secondary statistics.