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Software Information

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DeepScore is a software to analyze DEPTH values generated from DEPTH software.

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Installation

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Please refer to INSTALL file in the distribution.

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Usage and Requirements

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DEPTH code: if depth-generated files are not provided as input

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Compiling DEPTH: See Also; http://cospi.iiserpune.ac.in/depth/download/

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cd deepscore/Externals/DEPTH/bin make

To run the DeepScore with an example file, use the following:

python simple_API.py

This will plot the residue-wise depth values and atomwise depth values. The actual values can be accessed using DeepScore object as follows:

#DEPTH values are stored in ds_obj.ResidueDepths python dictionary. #Key-value pairs: key: (chain,residuenumber), value: [DEPTH value , Standard deviation]

for Residue_ID, Depth_vals in ds_obj.ResidueDepths.items():
    chain,residuenumber = Residue_ID
    DEPTH_value , Depth_SD =  Depth_vals

for Residue_ID, Depth_vals in ds_obj.AtomicDepths.items():
    chain,residuenumber,atomtype = Residue_ID
    DEPTH_value , Depth_SD =  Depth_vals