Merge pull request #168 from Daniel-VM/fix_canu_assembler

Fix wrong metadata in canu input channel
nf-core · Sep 18, 2024 · 1cb4574 · 1cb4574
2 parents 05e784a + a65648e
commit 1cb4574
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -17,6 +17,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Fixed`
 
+- [#168](https://github.com/nf-core/bacass/pull/168) Fix wrong metadata in canu input channel.
 - [#163](https://github.com/nf-core/bacass/pull/163) Fixed `params.save_merged` to properly save merged files.
 - [#160](https://github.com/nf-core/bacass/pull/160) Fixed memory issues in KmerFinder, fixed handling of no species detected, and fixed handling of empty fasta files in the prokka/bakkta channel.
 - [#157](https://github.com/nf-core/bacass/pull/157) Fixed corrupted zenodo URL of Kmerfinder database.

diff --git a/workflows/bacass.nf b/workflows/bacass.nf
@@ -231,7 +231,7 @@ workflow BACASS {
         CANU (
             ch_for_assembly.map { meta, reads, lr -> tuple( meta, lr ) },
             params.canu_mode,
-            ch_for_assembly.map { meta, reads, lr -> meta.genome_size }
+            ch_for_assembly.map { meta, reads, lr -> meta.gsize }
         )
         ch_assembly = ch_assembly.mix( CANU.out.assembly.dump(tag: 'canu') )
         ch_versions = ch_versions.mix(CANU.out.versions)