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fix prettier after adding code-reviewer suggestions
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Daniel-VM committed Sep 19, 2023
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45 changes: 22 additions & 23 deletions CHANGELOG.md
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Expand Up @@ -28,35 +28,34 @@ This version merges the nf-core template update v2.9. It also updates modules or

- [#61](https://github.com/nf-core/bacass/issues/61) - Update local/modules to nf-core/modules plus version update.

| Tool | Previous version | New version |
| ------ | ---------------- | ----------- |
| Canu | 2.1.1 | 2.2 |
| Minimap2 | 2.21 | 2.2 |
| Miniasm | 0.3 | - |
| Racon | 1.4.20-1 | - |
| Tool | Previous version | New version |
| -------- | ---------------- | ----------- |
| Canu | 2.1.1 | 2.2 |
| Minimap2 | 2.21 | 2.2 |
| Miniasm | 0.3 | - |
| Racon | 1.4.20-1 | - |

- Update already nf-core modules

| Tool | Previous version | New version |
| ------ | ---------------- | ----------- |
| Fastqc | 0.11.9 | - |
| Samtools | 1.13 | 2.1.2 |
| Kraken2 | 2.1.1 | 2.1.2 |
| Quast | 5.0.2 | 5.2.0 |
| Prokka | 1.14.6 | - |
| Multiqc | 1.10.1 | 1.15 |
| Tool | Previous version | New version |
| -------- | ---------------- | ----------- |
| Fastqc | 0.11.9 | - |
| Samtools | 1.13 | 2.1.2 |
| Kraken2 | 2.1.1 | 2.1.2 |
| Quast | 5.0.2 | 5.2.0 |
| Prokka | 1.14.6 | - |
| Multiqc | 1.10.1 | 1.15 |

- Refactor `local/modules` making them follow nf-core v2.9 structure/fashion.

| Tool | Previous version | New version |
| ------ | ---------------- | ----------- |
| Dfast | 1.2.14 | - |
| Medaka | 1.4.3-0 | - |
| Nanoplot | 1.38.0 | 1.41.6 |
| Nanopolish | 0.13.2-5 | 0.14.0 |
| Pycoqc | 2.5.2 | - |
| Unicycler | 0.4.8 | - |

| Tool | Previous version | New version |
| ---------- | ---------------- | ----------- |
| Dfast | 1.2.14 | - |
| Medaka | 1.4.3-0 | - |
| Nanoplot | 1.38.0 | 1.41.6 |
| Nanopolish | 0.13.2-5 | 0.14.0 |
| Pycoqc | 2.5.2 | - |
| Unicycler | 0.4.8 | - |

### `Deprecated`

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