fix bakta running only for one sample

nf-core · Oct 24, 2024 · 890f44c · 890f44c
1 parent 5fbe68d
commit 890f44c
Showing 1 changed file with 7 additions and 2 deletions.
diff --git a/subworkflows/local/bakta_dbdownload_run.nf b/subworkflows/local/bakta_dbdownload_run.nf
@@ -43,9 +43,14 @@ workflow BAKTA_DBDOWNLOAD_RUN {
     //
     // MODULE: BAKTA, gene annotation
     //
+    // Setup input channel for Bakta process
+    ch_fasta
+        .combine(ch_baktadb)
+        .set{ ch_to_bakta }
+    ch_to_bakta.view()
     BAKTA_BAKTA (
-        ch_fasta,
-        ch_baktadb,
+        ch_to_bakta.map{ meta, fasta, bakta_db -> [meta, fasta] },
+        ch_to_bakta.map{ meta, fasta, bakta_db -> bakta_db },
         [],
         []
     )